LOCUS CCO25855.1 1659 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Alpha-2-macroglobulin domain-containing protein protein. ACCESSION BX284606-2659 PROTEIN_ID CCO25855.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="F13D2.1" /locus_tag="CELE_F13D2.1" /standard_name="F13D2.1b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00008735" /db_xref="EnsemblGenomes-Tr:F13D2.1b" /db_xref="GOA:K8F7Z5" /db_xref="InterPro:IPR001599" /db_xref="InterPro:IPR011626" /db_xref="InterPro:IPR041555" /db_xref="UniProtKB/TrEMBL:K8F7Z5" /db_xref="WormBase:WBGene00008735" intron_pos 41:0 (1/36) intron_pos 63:1 (2/36) intron_pos 85:0 (3/36) intron_pos 119:1 (4/36) intron_pos 143:0 (5/36) intron_pos 210:1 (6/36) intron_pos 236:2 (7/36) intron_pos 272:0 (8/36) intron_pos 296:0 (9/36) intron_pos 342:0 (10/36) intron_pos 400:0 (11/36) intron_pos 459:0 (12/36) intron_pos 515:0 (13/36) intron_pos 570:0 (14/36) intron_pos 607:1 (15/36) intron_pos 649:1 (16/36) intron_pos 696:2 (17/36) intron_pos 726:2 (18/36) intron_pos 776:0 (19/36) intron_pos 866:2 (20/36) intron_pos 886:0 (21/36) intron_pos 925:1 (22/36) intron_pos 962:1 (23/36) intron_pos 1021:1 (24/36) intron_pos 1055:2 (25/36) intron_pos 1135:0 (26/36) intron_pos 1184:1 (27/36) intron_pos 1216:0 (28/36) intron_pos 1289:0 (29/36) intron_pos 1312:0 (30/36) intron_pos 1375:2 (31/36) intron_pos 1405:0 (32/36) intron_pos 1465:1 (33/36) intron_pos 1514:1 (34/36) intron_pos 1589:1 (35/36) intron_pos 1629:2 (36/36) BEGIN 1 MRLSTFLIIA FITCKVTTSP VIVLPPFFKL HGQNVITIVN EKSVKTVVQI DHGGEKTNKE 61 IQGEHQIISF HTSSSQSFAH IVIKVDGEVE LDQNVPVRPD LFNVHIHIDK AVYRKSELVN 121 VRILPLTHSG SIYRGDLSIT LVNGKGFVES STMRVKRVEE TDSMISDQLE IPSHTFFGDW 181 FLKVQPVEYG SKKIDEMLVF EKTFQVQDYD LPNYRLNGFL VDNSDLDKTT VTVEAKYFHG 241 KPVNGSVHVY CREVGSSSQD RSHLTHLRSG EFDNGIWSSI VDLGKCDPPN PLPKEIYIES 301 RENGTGYRQD LILGLDVMAP KFTITAVRPY FTNDVEEIIL LVDGDGIAHG NVSIRIECIS 361 EKNDVMRTKE VKVGSKIGDA LKIGIPKEWQ NDVSVIRVIA NRRIKNGFSN DTMLYIPNLS 421 NTSLVSSLIS PEEIKPFYKD DEIMNVHVKN TRKETNFVII CNSHTVHRVP NEVKNRILRV 481 KITDKMEGTC ILTAFTADSS VSDVMLFRVQ THCEDCKVKV SKVLNGMSKE LGNNDAIEPG 541 DVMELEFTGH SEAIVFYRAM DERLNYITLR NDYMIHEYLD YLIFGKQSQG AKILNLVNAE 601 KVEHAMKKMC TSAGHQLRFR CLQGQRSTSL VSEKCLKHVL KSCYKNSSAT AMQIVTPYLS 661 GKTTPVLSAS STNWLDNINV FRSKSMKAPL QLFVKPEFHD PGVVSQKSRI RQHFPETWLF 721 DAIVLERNGT KKITATSPDN VGQWALNNAY WWHGRVSLYP GQTKYIQTSK AIFLEVDMPR 781 NVYVNETISP LLTITGVDLV KSRETLVICL SELPRKVCAD QGANGKKGDT YYMKVEVSRS 841 SPIQSKYLMM KFLSPGVVNM TLTLKTENCQ TGKILDAVRK QIEIQKRADT EEYYERHILN 901 PSKPLVTAMN DDPGSTSSRN TKMITFSDQH GSMDEADTIN TLITSNVPDT ETVFSFSITL 961 SKFLPITDKI GKIPIGTRSK RNGQRILTSV IKELSIVLYK FKKLKLYGST SYQMEAEIND 1021 LINEMMQFSN CTSQKEPCAY SEFGKPQASN EASILLTSIA TSLLCEADVE ENRILGSLKT 1081 ITAYIPKLGR KDFNEDLSDI IDVENTEDKK YLLVSFMYQV SRDCSSYRSG LRDMTKSFGK 1141 LHKYFYELDE SAVQDRRTSA AIAFMATNAT AELMRSDLIA EINKEHPPYW KCNGYDTNRV 1201 DKLKRSSESF RRRRESCQVM VNSFALAAIV TAYAEGTEVD WDRLADWISE QQSSDGSYGS 1261 PLTTLVASRS LFEKSRRSVE IAYNDLLEVT VRCKGCSEKR INVTESAIEI HIPNNIHYVT 1321 LITKGHGKAV VAARIVATKR PRPKRGLTQD DYYPVHLSID QKVQDNFVHQ TVCFNVSNPT 1381 IKTLDIFHGT YTLFTATPDQ LYFLNDSYTP INPSSSALGL HFIITNIVSN QTLCYKVALS 1441 ESRGGKNIPY KSAPVPIRAT HPVQGLVGML LIAHPDVPRS DVLVRRRRHH HTRTRFVRRI 1501 IDESAVDTIC YDGGECSCAE TTCSVKCNKC HQDSPENLQQ LLSTNGIFGI RFELVSISNS 1561 LMNGANYTIY DGTVKDSNGL GAAAFELSKK VRVWLRSCNV GCTPGEKTLK RDYYVLGHED 1621 GLNSDSYGRQ NYILNHMDRF EESSYDCQNL NSAITIRYR //