LOCUS CCD68018.1 1852 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Voltage-dependent T-type calcium
channel subunit alpha protein.
ACCESSION BX284606-1833
PROTEIN_ID CCD68018.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="cca-1"
/locus_tag="CELE_C54D2.5"
/standard_name="C54D2.5c"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000367"
/db_xref="EnsemblGenomes-Tr:C54D2.5c"
/db_xref="GOA:Q7Z002"
/db_xref="InterPro:IPR002077"
/db_xref="InterPro:IPR005445"
/db_xref="InterPro:IPR005821"
/db_xref="InterPro:IPR027359"
/db_xref="UniProtKB/TrEMBL:Q7Z002"
/db_xref="WormBase:WBGene00000367"
intron_pos 23:2 (1/28)
intron_pos 51:0 (2/28)
intron_pos 70:0 (3/28)
intron_pos 104:2 (4/28)
intron_pos 183:0 (5/28)
intron_pos 213:2 (6/28)
intron_pos 291:2 (7/28)
intron_pos 317:2 (8/28)
intron_pos 353:2 (9/28)
intron_pos 381:0 (10/28)
intron_pos 406:0 (11/28)
intron_pos 437:0 (12/28)
intron_pos 479:1 (13/28)
intron_pos 519:0 (14/28)
intron_pos 561:1 (15/28)
intron_pos 728:2 (16/28)
intron_pos 790:2 (17/28)
intron_pos 834:0 (18/28)
intron_pos 894:0 (19/28)
intron_pos 1164:0 (20/28)
intron_pos 1244:2 (21/28)
intron_pos 1417:1 (22/28)
intron_pos 1467:1 (23/28)
intron_pos 1587:0 (24/28)
intron_pos 1654:0 (25/28)
intron_pos 1720:1 (26/28)
intron_pos 1780:0 (27/28)
intron_pos 1835:2 (28/28)
BEGIN
1 MLRQPVPELR SFQSLSKYAG GPRSVLGRRT SAITVNRRQS QSTRRHEDVE ALGSIEGSKE
61 TLQLSEHGRL ASSSEASPSR WEGRQIEWGN EEQIEEESEL PYPGFAEPAL RCFYQARPPR
121 KWALQMVMSP WFDRITMAVI MINCVTLGMY RPCEDGPDCD TYRCQILDII DNCIFVYFAF
181 EMVIKIMALG FYGPAAYMSD TWNRLDFFIV MAGIAEFVLH EYLGGNINLT AIRTVRVLRP
241 LRAVNRIPSM RILVNLLLDT LPMLGNVLLL CFFVFFIFGI VGVQLWAGLL RNRCVINLPK
301 TISENQSALF NNVKLTRFYI PEDTSLEYIC SQPDANGLHT CSNLPPYTVD GVKCNLTLDE
361 YDKVTNDSCI NWNIYYNECQ VMQRNPFQGS VSFDNIGFAW VAIFLVISLE GWTDIMYYVQ
421 DAHSFWNWIY FVLLIVIGAF FMINLCLVVI ATQFAETKRR ETERMLQERK MLLNRDSISC
481 TGSEIGGASS KEEGDTVYAA FVRFIGHTFR RTKRAAKKKY TAYMEERAER KSSERQQRRK
541 SKLDDMATLS RIEEKAEDEE DETTITRENG DDQIEQNGDG VRIKRVKIEE EPKIKIGNGN
601 SNGPHYKHSS SDEESDEDGE EDQVYDGEEA KKKSTPSKLW WFREKIQKFV ICDHFTRGIL
661 VAILVNTLSM GVEYHQQPEI LTVILEYSNL FFTALFALEM LLKIIASGLF GYLADGFNLF
721 DGGIVALSVL ELFQEGKGGL SVLRTFRLLR ILKLVRFMPA LRYQLVVMLR TMDNVTVFFG
781 LLVLFIFIFS ILGMNLFGCK FCKVEEKFLG GLAKKCERKN FDTLLWALIT VFQILTQEDW
841 NMVLFNGMAQ TNPWAALYFV ALMTFGNYVL FNLLVAILVE GFQESKEEEK RQLEEDARKQ
901 AVEEEDERKR ELELIIAKTT SPAFNNGVAP AECTCQRPSS PEESPSPRLL SANYHPSPER
961 KHSANLDAII DKRLVLRNSA PFDRSPVSEG RDDSRLNRHA SLVLPVANGV PYRRQRVHSW
1021 SGLCHHFNPN CPVHGRRALI ETYAREKFLE ASQELKQALA EEEKRNEAKQ NTFVRKLLKK
1081 TCLHNRTEFS LFLMGPKNPL RIKCLQTTQK KWFDYTVLFF IGINCITLAM ERPSIPPDSF
1141 ERQFLHISGY IFTVIFTGEM MMKVIANGCF IGQAAYFKDG WNILDGILVV ISLINIAFEL
1201 LATGDSPKIF GVIRVLRLLR ALRPLRVINR APGVKLVVMT LISSLKPIGN IVLICCTFFI
1261 IFGILGVQLF KGMMYHCIGP EVGNVTTKAD CIEDYRNKWV NHRYNFDNLG QALMSLFVLS
1321 SKDGWVSIMY QGIDAVGVDV QPIENYNEWR MIYFISFLLL VGFFVLNMFV GVVVENFHKC
1381 KEALEKEMRE KEKEKRLKRK LKRQKFEESM AGKRKKNRIV WAGSAIKSIF SVERNYPYYH
1441 DYGHTRLFLH GIVTSKYFDL AIAAVIGINV ISMAMEFYMM PMGLKYVLKA LNYFFTAVFT
1501 LEAAMKLIAL GFKRFFIEKW NRLDMFIVIL SIAGIIFEEF EALELPINPT IIRVMRVLRI
1561 ARVLKLLKMA KGIRSLLDTV GEALPQVGNL GSLFFLLFFI FAALGVELFG KLECSEDHPC
1621 DGLGEHAHFK NFGMAFLTLF RIATGDNWNG IMKDALRDDC DSSDHCETNC CVDPILAPCF
1681 FVIFVLISQF VLVNVVVAVL MKHLEESNKR DAEGPAEPTG ENIENEITKS DDDEIVEEHE
1741 PLAIEHVKEG ELDEEEETEE GPTTQIPDGH GGIKRLSMQV LEQELIEVER HLEERYRRAS
1801 ECLGGELQPL NPGEIEDLDD PEFRPRSRSH RPRARTNSAL SNKSRGSHKS AL
//