LOCUS CCD68018.1 1852 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Voltage-dependent T-type calcium channel subunit alpha protein. ACCESSION BX284606-1833 PROTEIN_ID CCD68018.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="cca-1" /locus_tag="CELE_C54D2.5" /standard_name="C54D2.5c" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00000367" /db_xref="EnsemblGenomes-Tr:C54D2.5c" /db_xref="GOA:Q7Z002" /db_xref="InterPro:IPR002077" /db_xref="InterPro:IPR005445" /db_xref="InterPro:IPR005821" /db_xref="InterPro:IPR027359" /db_xref="UniProtKB/TrEMBL:Q7Z002" /db_xref="WormBase:WBGene00000367" intron_pos 23:2 (1/28) intron_pos 51:0 (2/28) intron_pos 70:0 (3/28) intron_pos 104:2 (4/28) intron_pos 183:0 (5/28) intron_pos 213:2 (6/28) intron_pos 291:2 (7/28) intron_pos 317:2 (8/28) intron_pos 353:2 (9/28) intron_pos 381:0 (10/28) intron_pos 406:0 (11/28) intron_pos 437:0 (12/28) intron_pos 479:1 (13/28) intron_pos 519:0 (14/28) intron_pos 561:1 (15/28) intron_pos 728:2 (16/28) intron_pos 790:2 (17/28) intron_pos 834:0 (18/28) intron_pos 894:0 (19/28) intron_pos 1164:0 (20/28) intron_pos 1244:2 (21/28) intron_pos 1417:1 (22/28) intron_pos 1467:1 (23/28) intron_pos 1587:0 (24/28) intron_pos 1654:0 (25/28) intron_pos 1720:1 (26/28) intron_pos 1780:0 (27/28) intron_pos 1835:2 (28/28) BEGIN 1 MLRQPVPELR SFQSLSKYAG GPRSVLGRRT SAITVNRRQS QSTRRHEDVE ALGSIEGSKE 61 TLQLSEHGRL ASSSEASPSR WEGRQIEWGN EEQIEEESEL PYPGFAEPAL RCFYQARPPR 121 KWALQMVMSP WFDRITMAVI MINCVTLGMY RPCEDGPDCD TYRCQILDII DNCIFVYFAF 181 EMVIKIMALG FYGPAAYMSD TWNRLDFFIV MAGIAEFVLH EYLGGNINLT AIRTVRVLRP 241 LRAVNRIPSM RILVNLLLDT LPMLGNVLLL CFFVFFIFGI VGVQLWAGLL RNRCVINLPK 301 TISENQSALF NNVKLTRFYI PEDTSLEYIC SQPDANGLHT CSNLPPYTVD GVKCNLTLDE 361 YDKVTNDSCI NWNIYYNECQ VMQRNPFQGS VSFDNIGFAW VAIFLVISLE GWTDIMYYVQ 421 DAHSFWNWIY FVLLIVIGAF FMINLCLVVI ATQFAETKRR ETERMLQERK MLLNRDSISC 481 TGSEIGGASS KEEGDTVYAA FVRFIGHTFR RTKRAAKKKY TAYMEERAER KSSERQQRRK 541 SKLDDMATLS RIEEKAEDEE DETTITRENG DDQIEQNGDG VRIKRVKIEE EPKIKIGNGN 601 SNGPHYKHSS SDEESDEDGE EDQVYDGEEA KKKSTPSKLW WFREKIQKFV ICDHFTRGIL 661 VAILVNTLSM GVEYHQQPEI LTVILEYSNL FFTALFALEM LLKIIASGLF GYLADGFNLF 721 DGGIVALSVL ELFQEGKGGL SVLRTFRLLR ILKLVRFMPA LRYQLVVMLR TMDNVTVFFG 781 LLVLFIFIFS ILGMNLFGCK FCKVEEKFLG GLAKKCERKN FDTLLWALIT VFQILTQEDW 841 NMVLFNGMAQ TNPWAALYFV ALMTFGNYVL FNLLVAILVE GFQESKEEEK RQLEEDARKQ 901 AVEEEDERKR ELELIIAKTT SPAFNNGVAP AECTCQRPSS PEESPSPRLL SANYHPSPER 961 KHSANLDAII DKRLVLRNSA PFDRSPVSEG RDDSRLNRHA SLVLPVANGV PYRRQRVHSW 1021 SGLCHHFNPN CPVHGRRALI ETYAREKFLE ASQELKQALA EEEKRNEAKQ NTFVRKLLKK 1081 TCLHNRTEFS LFLMGPKNPL RIKCLQTTQK KWFDYTVLFF IGINCITLAM ERPSIPPDSF 1141 ERQFLHISGY IFTVIFTGEM MMKVIANGCF IGQAAYFKDG WNILDGILVV ISLINIAFEL 1201 LATGDSPKIF GVIRVLRLLR ALRPLRVINR APGVKLVVMT LISSLKPIGN IVLICCTFFI 1261 IFGILGVQLF KGMMYHCIGP EVGNVTTKAD CIEDYRNKWV NHRYNFDNLG QALMSLFVLS 1321 SKDGWVSIMY QGIDAVGVDV QPIENYNEWR MIYFISFLLL VGFFVLNMFV GVVVENFHKC 1381 KEALEKEMRE KEKEKRLKRK LKRQKFEESM AGKRKKNRIV WAGSAIKSIF SVERNYPYYH 1441 DYGHTRLFLH GIVTSKYFDL AIAAVIGINV ISMAMEFYMM PMGLKYVLKA LNYFFTAVFT 1501 LEAAMKLIAL GFKRFFIEKW NRLDMFIVIL SIAGIIFEEF EALELPINPT IIRVMRVLRI 1561 ARVLKLLKMA KGIRSLLDTV GEALPQVGNL GSLFFLLFFI FAALGVELFG KLECSEDHPC 1621 DGLGEHAHFK NFGMAFLTLF RIATGDNWNG IMKDALRDDC DSSDHCETNC CVDPILAPCF 1681 FVIFVLISQF VLVNVVVAVL MKHLEESNKR DAEGPAEPTG ENIENEITKS DDDEIVEEHE 1741 PLAIEHVKEG ELDEEEETEE GPTTQIPDGH GGIKRLSMQV LEQELIEVER HLEERYRRAS 1801 ECLGGELQPL NPGEIEDLDD PEFRPRSRSH RPRARTNSAL SNKSRGSHKS AL //