LOCUS CCD67047.1 1231 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EGF-like domain-containing protein protein.
ACCESSION BX284606-1247
PROTEIN_ID CCD67047.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lgx-1"
/locus_tag="CELE_C54G7.3"
/standard_name="C54G7.3b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00002983"
/db_xref="EnsemblGenomes-Tr:C54G7.3b"
/db_xref="InterPro:IPR000742"
/db_xref="InterPro:IPR006149"
/db_xref="InterPro:IPR006150"
/db_xref="UniProtKB/TrEMBL:D7SFK4"
/db_xref="WormBase:WBGene00002983"
intron_pos 16:1 (1/19)
intron_pos 53:2 (2/19)
intron_pos 92:1 (3/19)
intron_pos 161:0 (4/19)
intron_pos 295:1 (5/19)
intron_pos 346:1 (6/19)
intron_pos 392:1 (7/19)
intron_pos 440:1 (8/19)
intron_pos 476:0 (9/19)
intron_pos 579:1 (10/19)
intron_pos 623:1 (11/19)
intron_pos 650:1 (12/19)
intron_pos 679:0 (13/19)
intron_pos 727:1 (14/19)
intron_pos 878:1 (15/19)
intron_pos 908:0 (16/19)
intron_pos 948:2 (17/19)
intron_pos 1051:1 (18/19)
intron_pos 1088:1 (19/19)
BEGIN
1 MRVLLAISVI YHITIAQQVG INVPCNKELD GLLTADPDGD ERAFMSCQGV GVGTIGFWER
61 KLCPNNMVFD FINQHCKEQK KKARKQQNLS IAILNNSCAN GETCIGGSVC DLDTLRCMCP
121 YGTTPKLDTL SCESSQPPFV SATVDGPAQF FNSFSGGNGN RNNQNNGFMP FGQPSELPDF
181 QPNNNFKYGN NFGQNQNSNN NNNDFNWNPN FNWNNNQNNN NNNAPNKQAP MNNAGVGATT
241 TPDFNPFQPN PNQQFVFNFN KNQGGQNNQN NHVNNNNHNQ NIPVLESKPK VATLAIPGAS
301 CKSNEICVGG SICTLPIGIC LCPGDLEARE GECVLPAAST ISVQKVGIGA LCSDLAECDH
361 GSTCVMGRCT CVSPLVQHEG KCVLRQQQKI VGPGELCDSG ETCGKGSICD SVIPVCVCPA
421 QTDLSNGECI SVPAPTSQPV QVMTPPPTLP PVQVPIQTLP PQTRPPQLPP VQITQPPIQT
481 PVQPIFFQTT RPPMPTYATT PATTQFIPKQ IYTTPPQMPK NSIKINQMKI GGSKQAGVGV
541 RCSLNTDCMI GAYCNGNTNP PSCQCLSTHV NIEGRCEKVI YPGQVGCRSD LQCHAAHSGT
601 HCIDRICVCP EGQRAVDQTC VSASEPVTSP PGGSCSNLRE CTGGSVCREG WCICPDPSMI
661 VNRGICIQSG PKPTLPPRTP IPQVPLPPQL PISVHVPQVT ITKAQPFITE APLAPQGKKI
721 VPGGRCGPID VCVGGSNCIE GFCLCPAGQQ PSNSGRCEKF TTTSRQTTLP STTTTQGTTT
781 TTTAPPPTTS VFSFTIADLL STRRQPAFIE IPTHVPLTTT AIQTDDECTA IGLICKGNTV
841 CRNKSCQCPE TYVLHHDGCV SPEEAARRKA RGKARHEATT ARLYSKPGES CTQGQTCVGG
901 SACSFRKLCE CPQDKSEISQ GQCVTPRKLE VVPGASCNAN TVCTKGSTCE SGLCRCQPGY
961 IAVSGNCVAL PMSTTPKMRV IAKPLESCEN GETCEGGSNC DYDTGICMCP PGQIVFNVQC
1021 MPPPTQPQIT TRVTTPVKAA PVVTPKPIHS TDCEIDANCG ENKICVSGKC KCKPGFVDNS
1081 GTCEPLEDID VIERPIPVSY AKHKVATLSE RMMPREQIEL SNVEPVSFVT PARQESQTQK
1141 PRIVGPPIRR PRPKNKNSGG GSGGSGGSGG SRAYKTGNGN GNCPPGNEAT TDGSGKLILC
1201 NGLEPNCPPR SYCYITSGGF ATEEYNCCKS W
//