LOCUS CCD67047.1 1231 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans EGF-like domain-containing protein protein. ACCESSION BX284606-1247 PROTEIN_ID CCD67047.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="lgx-1" /locus_tag="CELE_C54G7.3" /standard_name="C54G7.3b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00002983" /db_xref="EnsemblGenomes-Tr:C54G7.3b" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR006149" /db_xref="InterPro:IPR006150" /db_xref="UniProtKB/TrEMBL:D7SFK4" /db_xref="WormBase:WBGene00002983" intron_pos 16:1 (1/19) intron_pos 53:2 (2/19) intron_pos 92:1 (3/19) intron_pos 161:0 (4/19) intron_pos 295:1 (5/19) intron_pos 346:1 (6/19) intron_pos 392:1 (7/19) intron_pos 440:1 (8/19) intron_pos 476:0 (9/19) intron_pos 579:1 (10/19) intron_pos 623:1 (11/19) intron_pos 650:1 (12/19) intron_pos 679:0 (13/19) intron_pos 727:1 (14/19) intron_pos 878:1 (15/19) intron_pos 908:0 (16/19) intron_pos 948:2 (17/19) intron_pos 1051:1 (18/19) intron_pos 1088:1 (19/19) BEGIN 1 MRVLLAISVI YHITIAQQVG INVPCNKELD GLLTADPDGD ERAFMSCQGV GVGTIGFWER 61 KLCPNNMVFD FINQHCKEQK KKARKQQNLS IAILNNSCAN GETCIGGSVC DLDTLRCMCP 121 YGTTPKLDTL SCESSQPPFV SATVDGPAQF FNSFSGGNGN RNNQNNGFMP FGQPSELPDF 181 QPNNNFKYGN NFGQNQNSNN NNNDFNWNPN FNWNNNQNNN NNNAPNKQAP MNNAGVGATT 241 TPDFNPFQPN PNQQFVFNFN KNQGGQNNQN NHVNNNNHNQ NIPVLESKPK VATLAIPGAS 301 CKSNEICVGG SICTLPIGIC LCPGDLEARE GECVLPAAST ISVQKVGIGA LCSDLAECDH 361 GSTCVMGRCT CVSPLVQHEG KCVLRQQQKI VGPGELCDSG ETCGKGSICD SVIPVCVCPA 421 QTDLSNGECI SVPAPTSQPV QVMTPPPTLP PVQVPIQTLP PQTRPPQLPP VQITQPPIQT 481 PVQPIFFQTT RPPMPTYATT PATTQFIPKQ IYTTPPQMPK NSIKINQMKI GGSKQAGVGV 541 RCSLNTDCMI GAYCNGNTNP PSCQCLSTHV NIEGRCEKVI YPGQVGCRSD LQCHAAHSGT 601 HCIDRICVCP EGQRAVDQTC VSASEPVTSP PGGSCSNLRE CTGGSVCREG WCICPDPSMI 661 VNRGICIQSG PKPTLPPRTP IPQVPLPPQL PISVHVPQVT ITKAQPFITE APLAPQGKKI 721 VPGGRCGPID VCVGGSNCIE GFCLCPAGQQ PSNSGRCEKF TTTSRQTTLP STTTTQGTTT 781 TTTAPPPTTS VFSFTIADLL STRRQPAFIE IPTHVPLTTT AIQTDDECTA IGLICKGNTV 841 CRNKSCQCPE TYVLHHDGCV SPEEAARRKA RGKARHEATT ARLYSKPGES CTQGQTCVGG 901 SACSFRKLCE CPQDKSEISQ GQCVTPRKLE VVPGASCNAN TVCTKGSTCE SGLCRCQPGY 961 IAVSGNCVAL PMSTTPKMRV IAKPLESCEN GETCEGGSNC DYDTGICMCP PGQIVFNVQC 1021 MPPPTQPQIT TRVTTPVKAA PVVTPKPIHS TDCEIDANCG ENKICVSGKC KCKPGFVDNS 1081 GTCEPLEDID VIERPIPVSY AKHKVATLSE RMMPREQIEL SNVEPVSFVT PARQESQTQK 1141 PRIVGPPIRR PRPKNKNSGG GSGGSGGSGG SRAYKTGNGN GNCPPGNEAT TDGSGKLILC 1201 NGLEPNCPPR SYCYITSGGF ATEEYNCCKS W //