LOCUS CCD67046.2 1554 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EGF-like domain-containing protein protein.
ACCESSION BX284606-1239
PROTEIN_ID CCD67046.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lgx-1"
/locus_tag="CELE_C54G7.3"
/standard_name="C54G7.3a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00002983"
/db_xref="EnsemblGenomes-Tr:C54G7.3a"
/db_xref="GOA:H2KZ94"
/db_xref="InterPro:IPR000742"
/db_xref="InterPro:IPR002509"
/db_xref="InterPro:IPR006149"
/db_xref="InterPro:IPR006150"
/db_xref="InterPro:IPR011330"
/db_xref="UniProtKB/TrEMBL:H2KZ94"
/db_xref="WormBase:WBGene00002983"
intron_pos 16:1 (1/28)
intron_pos 53:2 (2/28)
intron_pos 92:1 (3/28)
intron_pos 161:0 (4/28)
intron_pos 295:1 (5/28)
intron_pos 341:1 (6/28)
intron_pos 377:0 (7/28)
intron_pos 480:1 (8/28)
intron_pos 524:1 (9/28)
intron_pos 551:1 (10/28)
intron_pos 580:0 (11/28)
intron_pos 628:1 (12/28)
intron_pos 678:1 (13/28)
intron_pos 708:0 (14/28)
intron_pos 748:2 (15/28)
intron_pos 851:1 (16/28)
intron_pos 888:1 (17/28)
intron_pos 940:0 (18/28)
intron_pos 967:1 (19/28)
intron_pos 1056:1 (20/28)
intron_pos 1105:1 (21/28)
intron_pos 1150:1 (22/28)
intron_pos 1196:1 (23/28)
intron_pos 1238:2 (24/28)
intron_pos 1277:2 (25/28)
intron_pos 1329:0 (26/28)
intron_pos 1417:0 (27/28)
intron_pos 1493:0 (28/28)
BEGIN
1 MRVLLAISVI YHITIAQQVG INVPCNKELD GLLTADPDGD ERAFMSCQGV GVGTIGFWER
61 KLCPNNMVFD FINQHCKEQK KKARKQQNLS IAILNNSCAN GETCIGGSVC DLDTLRCMCP
121 YGTTPKLDTL SCESSQPPFV SATVDGPAQF FNSFSGGNGN RNNQNNGFMP FGQPSELPDF
181 QPNNNFKYGN NFGQNQNSNN NNNDFNWNPN FNWNNNQNNN NNNAPNKQAP MNNAGVGATT
241 TPDFNPFQPN PNQQFVFNFN KNQGGQNNQN NHVNNNNHNQ NIPVLESKPK VATLVGIGAL
301 CSDLAECDHG STCVMGRCTC VSPLVQHEGK CVLRQQQKIV VQVMTPPPTL PPVQVPIQTL
361 PPQTRPPQLP PVQITQPPIQ TPVQPIFFQT TRPPMPTYAT TPATTQFIPK QIYTTPPQMP
421 KNSIKINQMK IGGSKQAGVG VRCSLNTDCM IGAYCNGNTN PPSCQCLSTH VNIEGRCEKV
481 IYPGQVGCRS DLQCHAAHSG THCIDRICVC PEGQRAVDQT CVSASEPVTS PPGGSCSNLR
541 ECTGGSVCRE GWCICPDPSM IVNRGICIQS GPKPTLPPRT PIPQVPLPPQ LPISVHVPQV
601 TITKAQPFIT EAPLAPQGKK IVPGGRCGPI DVCVGGSNCI EGFCLCPAGQ QPSNSGRCEK
661 FTTTSRQTTL PSTTTTQATT ARLYSKPGES CTQGQTCVGG SACSFRKLCE CPQDKSEISQ
721 GQCVTPRKLE VVPGASCNAN TVCTKGSTCE SGLCRCQPGY IAVSGNCVAL PMSTTPKMRV
781 IAKPLESCEN GETCEGGSNC DYDTGICMCP PGQIVFNVQC MPPPTQPQIT TRVTTPVKAA
841 PVVTPKPIHS TDCEIDANCG ENKICVSGKC KCKPGFVDNS GTCEPLEGIR GRSLRYGQAC
901 DRYQDKCING AKCIDKICKC APGFLLAPNG WCEGFDLAKA IEINKQSIGT TPPVKANRVI
961 QTKMQQVYTT SSTISSTTTS PAPTQKPRIV PKDFPTPPSN IFGFPDRRTT KIVPKVAAVG
1021 SACRPIDICL GESVCTNGFC HCPENYIRQN GQCISKECKH KVAKVGETCK NGEICAGGSI
1081 CDYDRKRCIC AAQHVAIRGI CKQKSAPAFA APGDTCSMRE KCTGGATCFE GMCTCDDHHF
1141 AEDGYCRPIE ARSSKVQFVN GAGLRFSSMQ VPNRQRAQAC NEAECKLPNC FCTENGRRAP
1201 GGLRPDETPQ FVVLTFDDAV NGKTFSDYKK LFENDVLKNP NGCDVKATFF ISHEWTNYDA
1261 VNWLVQKNME IASNSISHES LENANTNRWL NEMDGQRRIL AKFGGAPEEE IVGIRSPQLA
1321 LGGDNQFEMM IGAEFLWDNS MSANPGIHGE PFWPQTMDYQ VAWDCNEASC PKSSFPGVWS
1381 VPLNQFYGSY MSQIDSFRRS SMLRAAVDLN NTVDELEEII TRNFERSYSA NRAPYVLSLN
1441 ADFLQLGGHN KGMKAVQKFL NRMSAQKDVY IVTIKQLIDW MKRPVPISEM KSSKAVGCPI
1501 TLSFNRNPSL STCDIPNKCL YSTPSLSSQE HQFLTCLPCP TMYPWLENPA GGIV
//