LOCUS CCD67046.2 1554 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans EGF-like domain-containing protein protein. ACCESSION BX284606-1239 PROTEIN_ID CCD67046.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="lgx-1" /locus_tag="CELE_C54G7.3" /standard_name="C54G7.3a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00002983" /db_xref="EnsemblGenomes-Tr:C54G7.3a" /db_xref="GOA:H2KZ94" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR002509" /db_xref="InterPro:IPR006149" /db_xref="InterPro:IPR006150" /db_xref="InterPro:IPR011330" /db_xref="UniProtKB/TrEMBL:H2KZ94" /db_xref="WormBase:WBGene00002983" intron_pos 16:1 (1/28) intron_pos 53:2 (2/28) intron_pos 92:1 (3/28) intron_pos 161:0 (4/28) intron_pos 295:1 (5/28) intron_pos 341:1 (6/28) intron_pos 377:0 (7/28) intron_pos 480:1 (8/28) intron_pos 524:1 (9/28) intron_pos 551:1 (10/28) intron_pos 580:0 (11/28) intron_pos 628:1 (12/28) intron_pos 678:1 (13/28) intron_pos 708:0 (14/28) intron_pos 748:2 (15/28) intron_pos 851:1 (16/28) intron_pos 888:1 (17/28) intron_pos 940:0 (18/28) intron_pos 967:1 (19/28) intron_pos 1056:1 (20/28) intron_pos 1105:1 (21/28) intron_pos 1150:1 (22/28) intron_pos 1196:1 (23/28) intron_pos 1238:2 (24/28) intron_pos 1277:2 (25/28) intron_pos 1329:0 (26/28) intron_pos 1417:0 (27/28) intron_pos 1493:0 (28/28) BEGIN 1 MRVLLAISVI YHITIAQQVG INVPCNKELD GLLTADPDGD ERAFMSCQGV GVGTIGFWER 61 KLCPNNMVFD FINQHCKEQK KKARKQQNLS IAILNNSCAN GETCIGGSVC DLDTLRCMCP 121 YGTTPKLDTL SCESSQPPFV SATVDGPAQF FNSFSGGNGN RNNQNNGFMP FGQPSELPDF 181 QPNNNFKYGN NFGQNQNSNN NNNDFNWNPN FNWNNNQNNN NNNAPNKQAP MNNAGVGATT 241 TPDFNPFQPN PNQQFVFNFN KNQGGQNNQN NHVNNNNHNQ NIPVLESKPK VATLVGIGAL 301 CSDLAECDHG STCVMGRCTC VSPLVQHEGK CVLRQQQKIV VQVMTPPPTL PPVQVPIQTL 361 PPQTRPPQLP PVQITQPPIQ TPVQPIFFQT TRPPMPTYAT TPATTQFIPK QIYTTPPQMP 421 KNSIKINQMK IGGSKQAGVG VRCSLNTDCM IGAYCNGNTN PPSCQCLSTH VNIEGRCEKV 481 IYPGQVGCRS DLQCHAAHSG THCIDRICVC PEGQRAVDQT CVSASEPVTS PPGGSCSNLR 541 ECTGGSVCRE GWCICPDPSM IVNRGICIQS GPKPTLPPRT PIPQVPLPPQ LPISVHVPQV 601 TITKAQPFIT EAPLAPQGKK IVPGGRCGPI DVCVGGSNCI EGFCLCPAGQ QPSNSGRCEK 661 FTTTSRQTTL PSTTTTQATT ARLYSKPGES CTQGQTCVGG SACSFRKLCE CPQDKSEISQ 721 GQCVTPRKLE VVPGASCNAN TVCTKGSTCE SGLCRCQPGY IAVSGNCVAL PMSTTPKMRV 781 IAKPLESCEN GETCEGGSNC DYDTGICMCP PGQIVFNVQC MPPPTQPQIT TRVTTPVKAA 841 PVVTPKPIHS TDCEIDANCG ENKICVSGKC KCKPGFVDNS GTCEPLEGIR GRSLRYGQAC 901 DRYQDKCING AKCIDKICKC APGFLLAPNG WCEGFDLAKA IEINKQSIGT TPPVKANRVI 961 QTKMQQVYTT SSTISSTTTS PAPTQKPRIV PKDFPTPPSN IFGFPDRRTT KIVPKVAAVG 1021 SACRPIDICL GESVCTNGFC HCPENYIRQN GQCISKECKH KVAKVGETCK NGEICAGGSI 1081 CDYDRKRCIC AAQHVAIRGI CKQKSAPAFA APGDTCSMRE KCTGGATCFE GMCTCDDHHF 1141 AEDGYCRPIE ARSSKVQFVN GAGLRFSSMQ VPNRQRAQAC NEAECKLPNC FCTENGRRAP 1201 GGLRPDETPQ FVVLTFDDAV NGKTFSDYKK LFENDVLKNP NGCDVKATFF ISHEWTNYDA 1261 VNWLVQKNME IASNSISHES LENANTNRWL NEMDGQRRIL AKFGGAPEEE IVGIRSPQLA 1321 LGGDNQFEMM IGAEFLWDNS MSANPGIHGE PFWPQTMDYQ VAWDCNEASC PKSSFPGVWS 1381 VPLNQFYGSY MSQIDSFRRS SMLRAAVDLN NTVDELEEII TRNFERSYSA NRAPYVLSLN 1441 ADFLQLGGHN KGMKAVQKFL NRMSAQKDVY IVTIKQLIDW MKRPVPISEM KSSKAVGCPI 1501 TLSFNRNPSL STCDIPNKCL YSTPSLSSQE HQFLTCLPCP TMYPWLENPA GGIV //