LOCUS CBJ25061.1 1593 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Girdin protein.
ACCESSION BX284606-2845
PROTEIN_ID CBJ25061.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="tag-241"
/locus_tag="CELE_C34E11.3"
/standard_name="C34E11.3b"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00044079"
/db_xref="EnsemblGenomes-Tr:C34E11.3b"
/db_xref="UniProtKB/TrEMBL:G5ED16"
/db_xref="WormBase:WBGene00044079"
intron_pos 48:1 (1/24)
intron_pos 103:0 (2/24)
intron_pos 125:0 (3/24)
intron_pos 180:0 (4/24)
intron_pos 227:0 (5/24)
intron_pos 364:0 (6/24)
intron_pos 416:0 (7/24)
intron_pos 443:2 (8/24)
intron_pos 478:2 (9/24)
intron_pos 547:1 (10/24)
intron_pos 592:0 (11/24)
intron_pos 688:0 (12/24)
intron_pos 859:0 (13/24)
intron_pos 914:1 (14/24)
intron_pos 956:1 (15/24)
intron_pos 1068:0 (16/24)
intron_pos 1114:0 (17/24)
intron_pos 1235:0 (18/24)
intron_pos 1309:2 (19/24)
intron_pos 1360:2 (20/24)
intron_pos 1389:1 (21/24)
intron_pos 1493:0 (22/24)
intron_pos 1521:1 (23/24)
intron_pos 1565:0 (24/24)
BEGIN
1 MGNQITCAPP EDRDTISMSS YFSVTSTNGM NSDRSCRGIE NGKSVKIYDT EALSVSSYLS
61 ATSKGMSSTK SCESVNDTKS MVTAFSGSIC EEERAITPTE NESEYIQTLK EEISQLRDIN
121 HSLKEEKAQW ALRQRLQNAE QSESSLINML EDRLNQAENQ IQDYRDENTV LKCELRELQE
181 TTFATSDEKL REKIRTTEGL CDELMEENEQ LKAEVKDLQQ EIEEMQDQYR EEEIEEFREL
241 QRELELNAKN CRVLQFKLRK TERSRDQAEA EKMHSEKKLD EYMNSCPEAV AASIKSDSAK
301 VKELEYEIRV AKEVSVRLHN ELEQTEEKRC KLEDEVFYLK EKVREIQTQN KWREARNKTD
361 IAVKRLSAEI AASVPNIPEN EMSKELRDAL EREIDLREQM RFSEEDLKRT QIRLQDVENE
421 NEELLKKLSK ASKLRPPMIR SASDGNAHLQ LELAESQVQH LNTKIERLEK TNDHLNKKIV
481 ELEADCKRGG VTSAHSKAGE FKLTPEMEKD MSKMIVTISE LERKNLELTT QVKQLETKVT
541 PKPNFVVPSG TTTTELRKEQ EKRKALEAQV NELKTTVFKS DNQKVISLAT KIEQLNGQLQ
601 MVNERCNTLH KKQVKDGEIQ YSDELKQKIE DLEKRLSEKL AIDSVSELQG KIPTIDEIEQ
661 CCEVLAAVET QTGRLCKQFE KIDHAQKDER RRSLSKDSGA AIIAELANVM QEMKNVHQKL
721 DKIKNVTPNT GLSVKRIPSK ENLLEIKCSK CDQLQTSIDE QANEISFYKK KNKDLTNQVL
781 QTEDRWTIEI EKQRQIFEKE IKTLGIRVAD AKRQNDELSE LLESKSTTLV EKTRSLEEQE
841 ERSKKLRAET ELLRKDMQEL ETDKKTVKEF EIKYKKLESI FETEREKMNG ERNRSKNELA
901 AMKKLKDDAE EHLKKLSDDQ KKNDAAWKIE KSKLEKDIAL LKKQLPDEHE MKESTATPQN
961 SISGESSPLR RQDSEKMLVL ELKKQISILE KRIADSNSSL EECKIQNAEL RDQLAKVQAN
1021 WEKDKEVFQH KTRKSEKLRT VEIDAMQQKF SSRMRIMEDT NKALHSQLVL ARRERDTNKD
1081 ALTNFEKQVT DERNNLKVKE KSANESTEKV KELQNRLTAK EEELERLNTD LRLTKEARKA
1141 DQILWNIDRA RNRNEKIDNT DSVETIRKQY RDCETFYSKE MDRLNDKITE ITAEKNRQKN
1201 EAQKTIRVLS EQIKVLEIEQ KNLSQNKDSQ QVVKEMIESE RERLQQIVHL NELQKLTRKY
1261 RLSSIIDQLA YVSEATRKTS REAEPDGIRY IINQLTVLRD DEAANNLNPD ERAGSVLGEK
1321 ASNGYAPSIS ECGEGTYDNI SQSSFSIRSV NSAPLRHAYS TESSNGFDKY GRPMRRGLYH
1381 EPSSSNNLSV PGRKTSNDEY SMSRAASFDN RSQFSEDEVT EDGRSSRPNS TGANILYRVR
1441 REELARGGQP SVKLMAKAFE AIDEPRTDKR GFFGIRKSRS VETTQNGKHS KFEEAANSAL
1501 MHSLGQVEEG VSSNYATLPR GGRNPFKNMG SRLVERVRRS LSRSSRQSRD SDREDEIEVQ
1561 VYKKPEKPIS SPKKTKKKSA ESKARKNSSN IFT
//