LOCUS CBJ25061.1 1593 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Girdin protein. ACCESSION BX284606-2845 PROTEIN_ID CBJ25061.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="tag-241" /locus_tag="CELE_C34E11.3" /standard_name="C34E11.3b" /note="Partially confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00044079" /db_xref="EnsemblGenomes-Tr:C34E11.3b" /db_xref="UniProtKB/TrEMBL:G5ED16" /db_xref="WormBase:WBGene00044079" intron_pos 48:1 (1/24) intron_pos 103:0 (2/24) intron_pos 125:0 (3/24) intron_pos 180:0 (4/24) intron_pos 227:0 (5/24) intron_pos 364:0 (6/24) intron_pos 416:0 (7/24) intron_pos 443:2 (8/24) intron_pos 478:2 (9/24) intron_pos 547:1 (10/24) intron_pos 592:0 (11/24) intron_pos 688:0 (12/24) intron_pos 859:0 (13/24) intron_pos 914:1 (14/24) intron_pos 956:1 (15/24) intron_pos 1068:0 (16/24) intron_pos 1114:0 (17/24) intron_pos 1235:0 (18/24) intron_pos 1309:2 (19/24) intron_pos 1360:2 (20/24) intron_pos 1389:1 (21/24) intron_pos 1493:0 (22/24) intron_pos 1521:1 (23/24) intron_pos 1565:0 (24/24) BEGIN 1 MGNQITCAPP EDRDTISMSS YFSVTSTNGM NSDRSCRGIE NGKSVKIYDT EALSVSSYLS 61 ATSKGMSSTK SCESVNDTKS MVTAFSGSIC EEERAITPTE NESEYIQTLK EEISQLRDIN 121 HSLKEEKAQW ALRQRLQNAE QSESSLINML EDRLNQAENQ IQDYRDENTV LKCELRELQE 181 TTFATSDEKL REKIRTTEGL CDELMEENEQ LKAEVKDLQQ EIEEMQDQYR EEEIEEFREL 241 QRELELNAKN CRVLQFKLRK TERSRDQAEA EKMHSEKKLD EYMNSCPEAV AASIKSDSAK 301 VKELEYEIRV AKEVSVRLHN ELEQTEEKRC KLEDEVFYLK EKVREIQTQN KWREARNKTD 361 IAVKRLSAEI AASVPNIPEN EMSKELRDAL EREIDLREQM RFSEEDLKRT QIRLQDVENE 421 NEELLKKLSK ASKLRPPMIR SASDGNAHLQ LELAESQVQH LNTKIERLEK TNDHLNKKIV 481 ELEADCKRGG VTSAHSKAGE FKLTPEMEKD MSKMIVTISE LERKNLELTT QVKQLETKVT 541 PKPNFVVPSG TTTTELRKEQ EKRKALEAQV NELKTTVFKS DNQKVISLAT KIEQLNGQLQ 601 MVNERCNTLH KKQVKDGEIQ YSDELKQKIE DLEKRLSEKL AIDSVSELQG KIPTIDEIEQ 661 CCEVLAAVET QTGRLCKQFE KIDHAQKDER RRSLSKDSGA AIIAELANVM QEMKNVHQKL 721 DKIKNVTPNT GLSVKRIPSK ENLLEIKCSK CDQLQTSIDE QANEISFYKK KNKDLTNQVL 781 QTEDRWTIEI EKQRQIFEKE IKTLGIRVAD AKRQNDELSE LLESKSTTLV EKTRSLEEQE 841 ERSKKLRAET ELLRKDMQEL ETDKKTVKEF EIKYKKLESI FETEREKMNG ERNRSKNELA 901 AMKKLKDDAE EHLKKLSDDQ KKNDAAWKIE KSKLEKDIAL LKKQLPDEHE MKESTATPQN 961 SISGESSPLR RQDSEKMLVL ELKKQISILE KRIADSNSSL EECKIQNAEL RDQLAKVQAN 1021 WEKDKEVFQH KTRKSEKLRT VEIDAMQQKF SSRMRIMEDT NKALHSQLVL ARRERDTNKD 1081 ALTNFEKQVT DERNNLKVKE KSANESTEKV KELQNRLTAK EEELERLNTD LRLTKEARKA 1141 DQILWNIDRA RNRNEKIDNT DSVETIRKQY RDCETFYSKE MDRLNDKITE ITAEKNRQKN 1201 EAQKTIRVLS EQIKVLEIEQ KNLSQNKDSQ QVVKEMIESE RERLQQIVHL NELQKLTRKY 1261 RLSSIIDQLA YVSEATRKTS REAEPDGIRY IINQLTVLRD DEAANNLNPD ERAGSVLGEK 1321 ASNGYAPSIS ECGEGTYDNI SQSSFSIRSV NSAPLRHAYS TESSNGFDKY GRPMRRGLYH 1381 EPSSSNNLSV PGRKTSNDEY SMSRAASFDN RSQFSEDEVT EDGRSSRPNS TGANILYRVR 1441 REELARGGQP SVKLMAKAFE AIDEPRTDKR GFFGIRKSRS VETTQNGKHS KFEEAANSAL 1501 MHSLGQVEEG VSSNYATLPR GGRNPFKNMG SRLVERVRRS LSRSSRQSRD SDREDEIEVQ 1561 VYKKPEKPIS SPKKTKKKSA ESKARKNSSN IFT //