LOCUS CBA28121.1 2624 aa PRT BCT 16-AUG-2011
DEFINITION Curvibacter putative symbiont of Hydra magnipapillata
hypothetical protein protein.
ACCESSION FN543104-570
PROTEIN_ID CBA28121.1
SOURCE Curvibacter putative symbiont of Hydra magnipapillata
ORGANISM Curvibacter putative symbiont of Hydra magnipapillata
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Comamonadaceae; Curvibacter.
REFERENCE 1 (bases 1 to 1568541)
AUTHORS Rattei T.
JOURNAL Submitted (16-AUG-2009) to the INSDC. Rattei T., Genome Oriented
Bioinformatics, Technische Universitaet Muenchen, Am Forum 1,
Bavaria, 85354 Freising, GERMANY.
REFERENCE 2
AUTHORS Chapman J.A., Kirkness E.F., Simakov O., Hampson S.E., Mitros T.,
Weinmaier T., Rattei T., Balasubramanian P.G., Borman J., Busam D.,
Disbennett K., Pfannkoch C., Sumin N., Sutton G., Viswanathan L.,
Walenz B., Goodstein D.M., Hellsten U., Kawashima T.,
Prochnik S.E., Putnam N.H., Shu S., Blumberg B., Dana C.E., Gee L.,
Kibler D.F., Law L., Lindgens D., Martinez D.E., Peng J.,
Wigge P.A., Bertulat B., Guder C., Nakamura Y., Ozbek S.,
Watanabe H., Khalturin K., Hemmrich G., Franke A., Augustin R.,
Fraune S., Hayakawa E., Hayakawa S., Hirose M., Hwang J., Ikeo K.,
Nishimiya-Fujisawa C., Ogura A., Takahashi T., Steinmetz P.R.,
Zhang X., Aufschnaiter R., Eder M.K., Gorny A.K., Salvenmoser W.,
Heimberg A.M., Wheeler B.M., Peterson K.J., Boettger A.,
Tischler P., Wolf A., Gojobori T., Remington K.A., Strausberg R.L.,
Venter J., Technau U., Hobmayer B., Bosch T.C., Holstein T.W.,
Fujisawa T., Bode H.R., David C.N., Rokhsar D.S., Steele R.E.
TITLE The dynamic genome of Hydra
JOURNAL Nature 464(7288), 592-596(2010).
PUBMED 20228792
COMMENT The assembly of the Hydra magnipapillata yielded eight large
putatively
bacterial scaffolds as evidenced by:
(1) high G+C content (in contrast to the low G+C content of the
Hydra
genome)
(2) no high-copy repeat sequences typical of Hydra scaffolds
(3) closely spaced single-exon ORFs with best hits to bacterial
genes.
These scaffolds spanned a total of 4 Mbp and represent an estimated
98% of
the bacterial chromosome. Phylogenetic analysis of 16S rRNA and
conserved
clusters of orthologous groups of proteins (COGs) indicate that
this
bacterium is a novel Curvibacter species belonging to the family
Comamonadaceae (order Burkholderiales).
FEATURES Qualifiers
source /organism="Curvibacter putative symbiont of Hydra
magnipapillata"
/mol_type="genomic DNA"
/clone="HmaUn_WGA69518_1"
/db_xref="taxon:667019"
protein /transl_table=11
/locus_tag="Csp_A05700"
/db_xref="GOA:C9Y8W9"
/db_xref="InterPro:IPR000421"
/db_xref="InterPro:IPR002884"
/db_xref="InterPro:IPR008979"
/db_xref="InterPro:IPR011049"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR019960"
/db_xref="InterPro:IPR036852"
/db_xref="InterPro:IPR041498"
/db_xref="UniProtKB/TrEMBL:C9Y8W9"
BEGIN
1 MQDDGATRIA VAAANGYTTA VSGLAQALSF RAWSGLDAAG QKASNGLLVT APAQTGVGTA
61 FGELLNSATW VVTGAVAVSD VRLVQDSGVQ GDGITRNPAL TAPANVAWGV SVDYRWQKDG
121 GNWSDWRSSY TPPATDGKAD GAYTVQVRQR NAQGESATQS LAFVLDSQVA APVVATQQLR
181 YIRVYHSDAQ TPLALSELKV MSGSTNLAAG KTATLSADSG YATHGANNTA ALTDGGADGW
241 WNGASGAGSN ITVAGGSTKP YMELDLGALQ NVDTIVLSSV ADVFTKATNI RVYASASSMA
301 GQTYSQLASN ANVKSFDVAN LMGLTSTWSG LGVAAQPMLS GTGEVGATVD IFDTAAVSVS
361 NTSGQIGSAV VQSDGSWRWQ ASSIVSGSHT ITTQQTDRAG NKSALSSGYS FTVNGTLMGT
421 PALDAASDSG TLGDTTTNVT APTLVGMGVS SGGSVEIYDN GSKVATVTAT VSPSGPRWTY
481 TPASSLASGV HSITAKDVGT GKTSAALALN IDTSAAAPSI TAPAASITNV APVISGTGAE
541 AFATVTLMAT PSSGAAAQTF ITVADASGAW RLDTGINTVA DASGAWRVDT GINTGSNGLN
601 TALNTALVPN QLYTLRASQT DVAGNTSALS SAQAVNYDTL ALAPTINPVP ASVASMFTLS
661 GTGEAGATVR VYDAQGGSTN TLGTATVQAN GSWALLAQGL AAGAHSFRAE QTDLAGNRSG
721 QTTALSSAGT TDVTVSTSAL SAPMLTLASD SGVLGDGITK VTTPSWSGQA AAGATVEVWD
781 SFNGVSSKVG SATANASGVW TLGATTSTLG EGKHSLVAKE LAADGVTVRR TSDAAALTID
841 TTPLGVPTMG LTSSSDSGAV GDSVTNVVLP TLTGTVDANA WVNVYRGGST LLGTAQANGS
901 GVWRYTVGTV LADGTIGFTA RQLDAAGNEG AASTVLNLSV DTDVSNTVRY LTLAKVSGNL
961 GFYQRLQEIA VYTDNGKKLD LRALGGTALS NYGSVPGLID GAGGDVTIDN PGSSLSWVRI
1021 DLTGFYRVSR IEVTVASDNP TRSNNYQVYG SSFDTGTGGG INYSASNPPS ADARLKYLGT
1081 VNASTPGQTV VFDQTLQTLG VLNVTPLQSG AQGVAPAPVL QGSGEAGAKV EVFDTVAGIR
1141 SSLGSTTVQA DGNWRWQASG IVSGSHTISV QQIDVAGNKS PVSSAYNFTV DSMLMGMPTL
1201 DAASDRGTLG DYTTNLTLPT FKGIALSVGD GSNAVQVWDN GKLLGNATIE SDKTWSLTPG
1261 NPLASGVHSI TVTDVAAGKT SNALALNIDT VCTVPVINAV ADSASAPVVT GTGEAGATIT
1321 LTATPADGTA VQTFTARVKA DGTWSVDIGA VQGSQALVQG KAYTLFATAT DVAGNTAAAA
1381 AVQHVLYDNV MNAQLQAADW RMDLASKGTL DAGDVLRLTF DQAVALTTAS LPTAVLGTGA
1441 LVAAVEPVAG KSRFWDVKLG TGQTLGGAAA GVTGSALAQA WALTGVSDAV GNAGTVNVGA
1501 GSLTALTAQV QAKQAPSWQV SMADVQDAGT LVQGWATPSA SLKLNWGGQV TAAFTADAQG
1561 YWSYSFYKNE SYFGRKVPQL GTDQTMSLLQ VNADTSTTTL WSQTARVEST PQATAMALPA
1621 GATARPLSVQ LAVRAGRSVA LDVRDATQDM PAGTWQVRVA GLAAYHTLNR GSRDSAGVWT
1681 VDASDWADLR VNTTTNTVQE DRVLTLSYQQ KQGSGPTATW VTQRQASVGL SVVPWVQIAA
1741 GVPTVDAQGF TQVQQVWNLG LKGLNGAGIT IGIHEGTSID INNVNNFELG NVLAGTYTTN
1801 GYYHGHRVGQ RAVGNFDGPF VGIAYGANIR WYDAPLGMDV TNWSVSTGAL DRWAWNDVDV
1861 TQRNGLGNVW AVAGSNYDGY MTALMRSTKG VTGITVTATD PVSGGWGGLS TGPGLWVAHP
1921 AWSTSEATPS VSGQAAMMLQ ANPGLGTRDV KNILALAATY YTTATPLDSF ALNGARSLNG
1981 AGLHYSTYVG FGVSNVFNAV RLAADWLADG SAPKVMTNWQ TNSATVATTP VSVAKTANTV
2041 TTVSVVVTDD VKLEALQIMC NINSDSFDKM RMVVTSPSGT QSVLANGTSA ASFNDMLLMT
2101 SNAFFGESSR GTWKVSFEFN ADATSAGAVS NLYLQLFGVV NEVNDKYVYT DQFGLHWQLA
2161 DTRTRAQMGW LSDLNGGNDS LMLSAMNTDV QVHLGRHGWL TSPSYKVLMA PGTRIENAFG
2221 GDGSDVLVGL PNAKSILRGN EGNDLLLAYG SGSTLDGGNA DDWLWLGGNT SATGGQGNDR
2281 FVVFQGEGTL TSTAAVRARM SDFDATQDSL MVYNTAGNFK LAQFDASGNL SGWAAVSNAS
2341 VLQTLRSQLA QSDAPDVLGV AVSGSASAPT LTLTWDQSPL HPTGSTVGSY AGWKLNGVAP
2401 AAATLTGGSL SLGYSGVGTG TGVYVLDTSD SQLYSTLGVK LGYQKIYVGS AGADTVDASG
2461 QSAAVAVFGQ GGSDVLTGGA GADLLVAAGL TAANVQVRMI GGQGADVFRL DMGIGNVGSG
2521 SVGGGSAGSG SASGRLQVSD FSLAQGDRLD LDALLQTIAH TQFVEDCVQI SRQNNDAVLA
2581 FDLSGQKAFA TSAFTVLLDN VYTQTTDITL RTLTYGSGMG AVLG
//