LOCUS CAR97831.2 1131 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans protein kinase C protein.
ACCESSION BX284606-2453
PROTEIN_ID CAR97831.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="pkn-1"
/locus_tag="CELE_F46F6.2"
/standard_name="F46F6.2b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00009793"
/db_xref="EnsemblGenomes-Tr:F46F6.2b"
/db_xref="GOA:G5EGE3"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR000961"
/db_xref="InterPro:IPR008271"
/db_xref="InterPro:IPR011009"
/db_xref="InterPro:IPR011072"
/db_xref="InterPro:IPR017441"
/db_xref="InterPro:IPR017892"
/db_xref="InterPro:IPR035892"
/db_xref="InterPro:IPR036274"
/db_xref="InterPro:IPR037313"
/db_xref="UniProtKB/TrEMBL:G5EGE3"
/db_xref="WormBase:WBGene00009793"
intron_pos 160:2 (1/9)
intron_pos 258:1 (2/9)
intron_pos 566:0 (3/9)
intron_pos 639:1 (4/9)
intron_pos 673:1 (5/9)
intron_pos 715:0 (6/9)
intron_pos 972:1 (7/9)
intron_pos 1037:0 (8/9)
intron_pos 1086:0 (9/9)
BEGIN
1 MDYHSNGNGI NGMNGSSRHS ADGPSTPTHS GNGHSNGEGN RYALSAHRNV VKPLGSNFGA
61 SGSATTSTPK SVISSLTSAC NNSPVLSFTR GVLRASRKKI RPLFSTFSTS SNTGYYRFES
121 PSSSLNAYYP QESFNGPILK MITCTESPPR SLDVLKRSKS TYWETAPAEM VELADKYNFT
181 INEGSSIQQE ALELRSVIRK DLTKKLKIKS GYSRIKLITS DRRQSEFLRY ELSDLNEQIA
241 DLQEDLQALE MYNSGAFDED VMYLDNLEDC DVENGPPSKL VILQLELEKE LKVKRGLEQF
301 LRGAPDKSKV HGDSQSLLDD SRAKIAMLRM QIERLSQEAP AVEGEPKTKV ELAIDDLIIR
361 FHKEKLIMDG SRNMIRILRS KRKPDSKAVD EAMNSYVIAS EKADLIKLAL LKYASSLPLE
421 HDHRKYLIGE INSGLIPKPP SLSQDRNSPS SEDGGNGTST SRRCSFMPYS LQISGCLEVT
481 INGCAGILSE VFERKIRKDV PGVPGFISVY GMDASGKKKK SARGPNSSEE VFCVLRIDNR
541 FIGATELRKI VDRNWDQKFD VDLDRSRELQ IELFYHDDRS MCGFAAVKLS NLIETSSKVG
601 IIVPVEPQGN IFVQFKYMNP VVSRKPKLER QRRLFRVKES NDGARQKLGV FAFSRLIKNR
661 GNEPSEKFAA FTGFTPMPSS SSQHQPGTSS SGPSTSSSIA STPTPSTSNS LFDKSFNPRK
721 SAKKREAREA AAVAPMTAAV AAVNLNAPST SNSMQPSTQE RNLVVDEFPT DRSGPSQAPP
781 VPAVRHIDFF ASSDGAPLTV EQFRLISVLG RGHFGKVILS QHNPTSNYYA LKVLKKGDIL
841 GRDEVESLMV EKRIFEVSSR ARHPFLVNLN GCFQTNEHVF FCMEYSMGGD LMRHIHDDVF
901 DEVRGCFYAA CVVLGLDFLH KHNIIYRDIK LDNLLLDREG YVKIADFGLC KENMGPFDKT
961 STFCGTPEFL APEVLSDSSY TRAIDWWGLG VLIFEMLVGE PPFSGDDEEE IFDSIISEDV
1021 RYPRYLSVES IAIMRRLLRK VPEKRLGYGE RDAEDIKIQR FFRHISWEWD KLLNREIRPP
1081 FQPQIRNPED VSNFDLEFTQ EKARFSAASS TRPITEADQR LFNNFDFSIV P
//