LOCUS CAD77145.1 1072 aa PRT BCT 27-FEB-2015
DEFINITION Rhodopirellula baltica SH 1 acriflavine resistance protein
B protein.
ACCESSION BX294152-252
PROTEIN_ID CAD77145.1
SOURCE Rhodopirellula baltica SH 1
ORGANISM Rhodopirellula baltica SH 1
Bacteria; Planctomycetes; Planctomycetia; Pirellulales;
Pirellulaceae; Rhodopirellula.
REFERENCE 1 (bases 1 to 304250)
AUTHORS Gloeckner F.O., Kube M., Bauer M., Teeling H., Lombardot T.,
Ludwig W., Gade D., Beck A., Borzym K., Heitmann K., Rabus R.,
Schlesner H., Amann R., Reinhardt R.
TITLE Complete genome sequence of the marine planctomycete Pirellula sp.
strain 1
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 100(14), 8298-8303(2003).
PUBMED 12835416
REFERENCE 2 (bases 1 to 304250)
AUTHORS Kube M., Borzym K., Heitmann K., Klages S., Marquardt I.,
Lehrack S., Beck A., Pawlik R., Reinhardt R., Gloeckner F.O.,
Bauer M., Teeling H., Lombardot T., Ludwig W., Gade D., Rabus R.,
Schlesner H., Amann R.
JOURNAL Submitted (21-JAN-2003) to the INSDC. Max Planck Institute for
Molecular Genetics, proScience Ihnestrasse 73, D-14195 Berlin,
Germany Max Planck Institute for Marine Microbiology Celsiusstrasse
1, D-28359 Bremen, Germany.
COMMENT This project was carried out by
*Max Planck Institute for Molecular Genetics, Berlin, Germany;
*Max Planck Institute for Marine Microbiology, Bremen, Germany;
in the fremework of the REGX-project, http://www.regx.de
-------------- Genome Center
Center: Max Planck Institute for Molecular Genetics
Center code: MPIMG
-------------- Summary Statistics
Sequencing vector: pUC19; 100% of reads
Chemistry: Dye-terminator Big Dye; 100% of reads
Assembly program: Phrap; version 0.990329
Consensus quality: 7142841 bases at least Q40
Consensus quality: 7145138 bases at least Q30
Consensus quality: 7145484 bases at least Q20
Quality coverage: 8.03
--------------
This sequence was finished as follows unless otherwise noted:
all regions were double stranded, sequenced with an alternate
chemistry, or coveredby high quality data (i.e., phred quality
>= 30); an attempt was made to resolve all sequencing problems,
such as compressions and repeats; allregions were covered by at
least one plasmid Sequence; assembly was additionally confirmed
by long range pcr and cosmid end sequences.
--------------
See http://www.micro-genomes.mpg.de/pirellula/ for more information
including minimal tiling path from a set of 220 cosmids out of
908.
See the misc_feature tag below for the boundaries of the MTP
cosmids.
-------------- Annotation
Center: Max Planck Institute for Marine Microbiology
Celsiusstrasse 1, D-28359 Bremen, Germany.
Center Code: MPIMM
Email: fog@mpi-bremen.de
Phone: +49 (0)421 2028 938 Fax: +49 (0)421 2028 580
--------------
Three different programs (Glimmer, Critica and Orpheus) were used
for ORF-prediction. A nonredundant list of ORFs was generated by
suitable parsing of the results.
Automated annotation was done with the software package Pedant Pro
(http://www.biomax.de). All ORF predictions and annotations were
manually corrected by considering all results of the different
tools applied. See http://www.regx.de for more information and
access to supplementary information.
--------------
FEATURES Qualifiers
source /organism="Rhodopirellula baltica SH 1"
/strain="1"
/mol_type="genomic DNA"
/db_xref="taxon:243090"
protein /transl_table=11
/gene="acrB"
/locus_tag="RB11072"
/function="drug transporters"
/note="PMID: 8905231 PMID: 8407802 PMID: 7651136 best DB
hits: BLAST: pir:F83335; RND multidrug efflux transporter
MexF PA2494 [imported] -; E=0.0 pir:T30830; hypothetical
protein mexF - Pseudomonas aeruginosa -----; E=0.0
pir:D83206; probable RND efflux transporter PA3522
[imported] -; E=0.0 COG: PA2494; COG0841 Cation/multidrug
efflux pump; E=0.0 PFAM: PF00873; AcrB/AcrD/AcrF family;
E=0"
/db_xref="GOA:Q7UJT6"
/db_xref="InterPro:IPR000731"
/db_xref="InterPro:IPR001036"
/db_xref="InterPro:IPR004764"
/db_xref="InterPro:IPR027463"
/db_xref="UniProtKB/TrEMBL:Q7UJT6"
BEGIN
1 MDLTPTDRRS SCGSHDGGET MKFPHFFIER PIFASVLSFV IVLVGGIVYF TLPVSQYPSV
61 APPTVLVRAS YPGATPEVIA DTVATPIEQE MNGVDDMLYM ESSSSSDGTM QLTVTFKLGT
121 DLDDAQVLVQ NRVAIAESRL PEQVRQIGVT TTKQIPDMLM VVHLNSPDDS RDQLYISNYA
181 FLRVRDALMR LDGVGEIRIA GGNEYAMRIW LDIEKMTHVD LTAGEVVDAI QAQNIQVAAG
241 VIGQPPTDET GDFQLNVTTQ GRLIREDEFG DIIVKRGEDG RITRLRDVAR IELGAQDYSR
301 LSYLDGKSAI AVLVYQRPGT NAVDTAAEVK RVMSEMSEEF PQGIGYEIAY NPTDYVEDSI
361 AEVFETLFIT TIFVVLTVFL FLHGWRPTII PVIAIPISLI GTFAVMQFLG VTLNTLSLFG
421 LVLAIGIVVD DAIVVVENVE RLIAEGMTAR EATHKAMDEV GSALIATTLV LIAVFVPTVF
481 VPGISGQFYQ QFALTISIST AISTFVSLTL SPALCALLLR PKNAPKNRTG KAIDFLFGWF
541 FRLFNRTFDA TSNIYASIIG RLIKKTGFAM VLYVGLLILT GFSFSMVPTG FIPDQDQGYV
601 IVAINLPDGA SLARTDRVTR RVAEIGKEID GVAHAVGIAG LSGATFSIKP NAAVTFLPLE
661 DAKERAKRGR GVDAIVADMR REVAAINEAQ ILIIPPPPIR GIGRGGGFKM YVQDRSGAGL
721 DAMNEVTQTM LAKANQQPGV TQVFSNLRMD VPQVYADVDR TKAQMLDVPV NRVFEALQVY
781 LGSVYINDFN FLGRTYRVTA QAEPKFRDEA TDITKIRTRS DRGASIALGS VVNITQTAGP
841 DRLVRFNLFP AADLNGTTVP GFSTGQSLAT MEQLADQNLP PGFGYEWTEI AFQERQAGNT
901 IVFLFPLAVL FVFLALSAQY ESWLLPLAII LIVPLCLLFA LSGVWFRGMD NNVLTQIGFI
961 VLIGLACKNA ILIVEFAKAE EDAGKNRFDA AIAACRLRLR PILMTAFSFI LGVVPLLVAT
1021 GAGFEMRRVL GTAVFAGMLG VTVFGLFLTP VFYVMLRRFA KKKEPETTVD AV
//