LOCUS CAB89275.2 452 aa PRT HUM 13-JAN-2009
DEFINITION Homo sapiens chromosome 6 open reading frame 40 protein.
ACCESSION AL050328-8
PROTEIN_ID CAB89275.2
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 54106)
AUTHORS Griffiths C.
JOURNAL Submitted (09-JAN-2009) to the INSDC. Wellcome Trust Sanger
Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries:
vega@sanger.ac.uk Clone requests: Geneservice
(http://www.geneservice.co.uk/) and BACPAC Resources
(http://bacpac.chori.org/)
COMMENT -------------- Genome Center
Center: Wellcome Trust Sanger Institute
Center code: SC
Web site: http://www.sanger.ac.uk
Contact: vega@sanger.ac.uk
--------------
This sequence was finished as follows unless otherwise noted: all
regions
were either double-stranded or sequenced with an alternate
chemistry or
covered by high quality data (i.e., phred quality >= 30); an
attempt was
made to resolve all sequencing problems, such as compressions and
repeats;
all regions were covered by at least one subclone; and the assembly
was
confirmed by restriction digest, except on the rare occasion of the
clone
being a YAC.
The following abbreviations are used to associate primary accession
numbers given in the feature table with their source databases:
Em:, EMBL; Sw:, SWISSPROT; Tr:, TREMBL; Wp:, WORMPEP;
Information on the WORMPEP database can be found at
http://www.sanger.ac.uk/Projects/C_elegans/wormpep
This sequence was generated from part of bacterial clone contigs of
human chromosome 6, constructed by the Sanger Centre Chromosome 6
Mapping Group. Further information can be found at
http://www.sanger.ac.uk/HGP/Chr6
IMPORTANT: This sequence is not the entire insert of clone
RP11-145L22. It
may be shorter because we sequence overlapping sections only once,
except
for a short overlap.
During sequence assembly data is compared from overlapping clones.
Where
differences are found these are annotated as variations together
with a
note of the overlapping clone name. Note that the variation
annotation may
not be found in the sequence submission corresponding to the
overlapping
clone, as we submit sequences with only a small overlap.
The true right end of clone RP1-271M21 is at 100 in this sequence.
The true left end of clone RP3-377H14 is at 54007 in this sequence.
RP11-145L22 is from the library RPCI-11.1 constructed by the group
of
Pieter de Jong. For further details see
http://bacpac.chori.org/
VECTOR: pBACe3.6
FEATURES Qualifiers
source /organism="Homo sapiens"
/chromosome="6"
/map="p21.32-22.2"
/mol_type="genomic DNA"
/clone_lib="RPCI-11.1"
/clone="RP11-145L22"
/db_xref="taxon:9606"
protein /locus_tag="RP11-145L22.2-001"
/standard_name="OTTHUMP00000017882"
/note="match: proteins: Sw:O75467 Sw:O75820 Sw:P17038
Sw:P17097 Sw:P17098 Sw:P21506 Sw:P51523 Sw:P51786
Sw:P52736 Sw:Q06730 Sw:Q15928 Sw:Q60585 Sw:Q61967
Sw:Q99676 Sw:Q99676 Sw:Q9Y2Q1 Sw:Q9Y473 Tr:O14898
Tr:P70405 Tr:Q61491 Tr:Q62515 Tr:Q9Y2N9 Tr:Q9Y6R6
Tr:Q9Z117"
/db_xref="GOA:Q9NU63"
/db_xref="HGNC:HGNC:18791"
/db_xref="InterPro:IPR001909"
/db_xref="InterPro:IPR013087"
/db_xref="InterPro:IPR036051"
/db_xref="InterPro:IPR036236"
/db_xref="UniProtKB/Swiss-Prot:Q9NU63"
intron_pos 8:0 (1/3)
intron_pos 56:1 (2/3)
intron_pos 78:2 (3/3)
BEGIN
1 MAAGEPRSLL FFQKPVTFED VAVNFTQEEW DCLDASQRVL YQDVMSETFK NLTSVARIFL
61 HKPELITKLE QEEEQWRETR VLQASQAGPP FFCYTCGKCF SRRSYLYSHQ FVHNPKLTNS
121 CSQCGKLFRS PKSLSYHRRM HLGERPFCCT LCDKTYCDAS GLSRHRRVHL GYRPHSCSVC
181 GKSFRDQSEL KRHQKIHQNQ EPVDGNQECT LRIPGTQAEF QTPIARSQRS IQGLLDVNHA
241 PVARSQEPIF RTEGPMAQNQ ASVLKNQAPV TRTQAPITGT LCQVARSNSH PVKPSRLNVF
301 CCPHCSLTFS KKSYLSRHQK AHLTEPPNYC FHCSKSFSSF SRLVRHQQTH WKQKSYLCPI
361 CDLSFGEKEG LMDHWRGYKG KDLCQSSHHK CRVILGQWLG FSHDVPTMAG EEWKHGGDQS
421 PPRIHTPRRR GLREKACKGD KTKEAVSILK HK
//