LOCUS       CAB54257.1               629 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans LIM interaction domain-containing
            protein protein.
ACCESSION   BX284606-2623
PROTEIN_ID  CAB54257.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="ldb-1"
                     /locus_tag="CELE_F58A3.1"
                     /standard_name="F58A3.1c"
                     /note="Partially confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00002261"
                     /db_xref="GOA:Q9U3E2"
                     /db_xref="InterPro:IPR029005"
                     /db_xref="InterPro:IPR041363"
                     /db_xref="UniProtKB/TrEMBL:Q9U3E2"
                     /db_xref="WormBase:WBGene00002261"
     intron_pos      42:1 (1/8)
     intron_pos      81:2 (2/8)
     intron_pos      118:0 (3/8)
     intron_pos      159:1 (4/8)
     intron_pos      261:0 (5/8)
     intron_pos      308:0 (6/8)
     intron_pos      336:1 (7/8)
     intron_pos      408:0 (8/8)
BEGIN
        1 MCVVIFLKFL FSDNGNNQHG TEAAFGRLAQ SYRIQDLLFI IVIFFRAIHI MMFHRPPSAR
       61 PPLNHVDQLK SLQATALGKP GMRSQATEPQ PIGNTVSPLE FRIHDMNRRL YIFSSTGVSE
      121 NDQQQWWDAF SHEFFDDDCK LWFVIGSEPV AFASRERYII NRQFIPKFFR SIFDSGMREL
      181 QYVLRGPSRE CTLANGSQAY ENENVLQITR YDQSSQFEVN TEGKLYVEFA PFDEVMNYRI
      241 KAWTLELKRS NEFVYNQNTA DYRVEAQNPE QENKPRMGFF KSTFNLMTML KILDPMQSIM
      301 SSAKSAPAIT PREVMKRTLF QHHQVRQQNM RQQQLNQQMM IPAPEPEKPK PARKRQRKPA
      361 ANPRGSKKAT AAAAAAAAAA TNGVPPTVPT ASPANNQQFP PNPMTSQFQQ MSYPDVMVVG
      421 EPSMMGSEFG ENDERTISRV ENSQYDPNAM QMQSLGQGPN SSMNINGRNM MNQHHPGMQP
      481 PPGQQHMPPH SMGSQMPTSM HNPMHMPPGS MQGHGGMPPM PSTMANQMPP PNLPPHTMSN
      541 QMPNSRMPPM QGQMPPSGMP GQMSNPNMMG SGMPPMSMSS QMPGSMSNPM PNQMPGGMQM
      601 NQMPPPNYSQ YTGGPPPQWP PPNSAMITG
//