LOCUS CAB54257.1 629 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans LIM interaction domain-containing protein protein. ACCESSION BX284606-2623 PROTEIN_ID CAB54257.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="ldb-1" /locus_tag="CELE_F58A3.1" /standard_name="F58A3.1c" /note="Partially confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00002261" /db_xref="GOA:Q9U3E2" /db_xref="InterPro:IPR029005" /db_xref="InterPro:IPR041363" /db_xref="UniProtKB/TrEMBL:Q9U3E2" /db_xref="WormBase:WBGene00002261" intron_pos 42:1 (1/8) intron_pos 81:2 (2/8) intron_pos 118:0 (3/8) intron_pos 159:1 (4/8) intron_pos 261:0 (5/8) intron_pos 308:0 (6/8) intron_pos 336:1 (7/8) intron_pos 408:0 (8/8) BEGIN 1 MCVVIFLKFL FSDNGNNQHG TEAAFGRLAQ SYRIQDLLFI IVIFFRAIHI MMFHRPPSAR 61 PPLNHVDQLK SLQATALGKP GMRSQATEPQ PIGNTVSPLE FRIHDMNRRL YIFSSTGVSE 121 NDQQQWWDAF SHEFFDDDCK LWFVIGSEPV AFASRERYII NRQFIPKFFR SIFDSGMREL 181 QYVLRGPSRE CTLANGSQAY ENENVLQITR YDQSSQFEVN TEGKLYVEFA PFDEVMNYRI 241 KAWTLELKRS NEFVYNQNTA DYRVEAQNPE QENKPRMGFF KSTFNLMTML KILDPMQSIM 301 SSAKSAPAIT PREVMKRTLF QHHQVRQQNM RQQQLNQQMM IPAPEPEKPK PARKRQRKPA 361 ANPRGSKKAT AAAAAAAAAA TNGVPPTVPT ASPANNQQFP PNPMTSQFQQ MSYPDVMVVG 421 EPSMMGSEFG ENDERTISRV ENSQYDPNAM QMQSLGQGPN SSMNINGRNM MNQHHPGMQP 481 PPGQQHMPPH SMGSQMPTSM HNPMHMPPGS MQGHGGMPPM PSTMANQMPP PNLPPHTMSN 541 QMPNSRMPPM QGQMPPSGMP GQMSNPNMMG SGMPPMSMSS QMPGSMSNPM PNQMPGGMQM 601 NQMPPPNYSQ YTGGPPPQWP PPNSAMITG //