LOCUS CAB01754.1 1785 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans ZM domain-containing protein protein.
ACCESSION BX284606-2762
PROTEIN_ID CAB01754.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="hpo-34"
/locus_tag="CELE_F29G6.3"
/standard_name="F29G6.3b"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00009259"
/db_xref="EnsemblGenomes-Tr:F29G6.3b"
/db_xref="UniProtKB/TrEMBL:Q93636"
/db_xref="WormBase:WBGene00009259"
intron_pos 10:1 (1/11)
intron_pos 44:0 (2/11)
intron_pos 62:0 (3/11)
intron_pos 89:0 (4/11)
intron_pos 111:0 (5/11)
intron_pos 144:2 (6/11)
intron_pos 184:0 (7/11)
intron_pos 219:0 (8/11)
intron_pos 253:0 (9/11)
intron_pos 289:0 (10/11)
intron_pos 1084:0 (11/11)
BEGIN
1 MMETRNASDS LMDQVFSAVT LPAVGQTTTI MEHHQESHTV FHQESHHVES HHEHMEFSSS
61 GVIVGNVVGH DAVIQRRPTV DTEDQRSEVS AMSKATSVSV HSSVSQKSAQ HYDLPPIPQY
121 DMPPIVVGEA VVGKAPSVAS SRSGSHHSVA SHHSHHSQHS HHSALTHDSE STISEGTLVN
181 EPIVVGAHVA SEAPTPLAVG QSFEHDAVIE QFKNLHGRDQ SVVSSIVPAS VHIQSDSEDS
241 IAPSKLTHSI AVGGVVDSHN GVNVLHRSHE VEFVDFAAPA YYQPPSVVGA FDAHSEDSFG
301 FEKVEYVDTH EDHHHKLEEQ VPQVVHEHVI EQHYEPYQIV HENHNVLSVD FGEDQHSITH
361 HDHDHHHHHH ESHVTHTFTS NVKQSRSNTA STYQSRQMLA HNVGPKITEE LRPAAVLEEE
421 EVEVRPPVMA YVAPIPVKPP RTHEESHIYN AYETEIHQQK DIVKSTTVVL EDVRSGSEGI
481 HIRADNSSSV DIIGVSSLRR KFEHGAPPPL SPVFEMKKHE HHKHLDQHHH HKHQDVVVEQ
541 TQFQVGDNFI SSSSSKAIEN HYDVPFDSYE IVDKSENTKK SSSSYHASSS YHKQAPPLPL
601 VDYHVYDTPT VEHFSHSPAF YTDDQRHHYV PQIKVITEYR HINPRHHYVE RQIRKADGSA
661 IAQSPQVQTI DYFKEINRAH HFVPSTPPSL FNNKRESFHH HSFIPNSLEA ERKSRSVERA
721 HHYLPDSPAN VKDQRKIIRE HHYVPLEKRS QSLDLKVVHP EHHYVPLVRK TTEDHQQKVN
781 HEHHFIPAEK KTEAVKDVVH EHHYIPLTAH KTDEHNVNIT REHHYIPLKT EQVQSKTEIE
841 RHNQYVPMTT HKETKSFDTG RSHSYIPLGG NVEQSKTEIF RQHNFVPVVD KKEKNVEEIN
901 QKHNYVPAHS NVAVSDKEPI SRHHNFVPLA TKTVEETRHS NDLSHHHYMP LPAKREEGKT
961 AAGDKVGYEH HYYPLASNTE RVSVHKGQEH HYVPLIAKPT ESHASKIVIQ HQYIPLAMRH
1021 QSVPRLPSEH NYIPIAIHDD SHQKVDLTNH QYLPPIVNAE QKEAVKLYEH QYVPLPPKKD
1081 SFANYSSKAP QLPREHHYYP APVRSVEHHQ KHVHEQHNYI PAVHHHETNH QLDRQHGYIP
1141 VAAKHEAKKN VLYEHQYIPP ITRTEQTNGY DRRHNYVPVG KTAKATTTDI HVHQDHQYVP
1201 QASPRKTISE VNRSHNYIPA LPPKEHQSRH EHYQSHSYLP PSQKSTSHQS PPKLINHSFV
1261 PQIPHKTKDN QVVHEHGYVP PVKKSDLKTS VDHSKHEYLP SVVHTESKDD FKHSKHGYVP
1321 SLEHSQRIER GVVSTHNYVP PVTKIIEKNA SDPTKHGYLP QSKRSKSSDQ IDHSKHGFLP
1381 SIKHQEAQDH ADHSRHGYVP PTKKAHNDYW GFERDHHYVP DTLKKDKIKQ IHREHNFVPS
1441 VVPAKPDEKF EGQDHHYVPS VRKTTGITSE IEHRHNFVEK IPSKHETPKL PETHNYVPTV
1501 HKSQNLDRST LEKHNYVPTY QKKFEPRRTD IRHHNYVPTI VKPHEHRDNF DHHHYVPQIA
1561 KPSDVKLSDY DKHHYVPPVF EKSVVNQVEY EHKYTPTVVK STEPRILNHT QHHYTPSHQI
1621 VSNTYDDIDT HHGYLPQIPR KETAARVPLG HHFVPQIPHK EVAPDYDHHH HYVPSVQPKA
1681 PTPAVDYQHH YLPSVKKPTS TTTDMIRQQR KKILKSTDDD EDQENQYVAK PPVYTNAFVK
1741 PYKTIPDEPT NYMLKNGKSR NNGIPEEPSQ PVPKPRSFTS PQPDY
//