LOCUS CAB01754.1 1785 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans ZM domain-containing protein protein. ACCESSION BX284606-2762 PROTEIN_ID CAB01754.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="hpo-34" /locus_tag="CELE_F29G6.3" /standard_name="F29G6.3b" /note="Partially confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00009259" /db_xref="EnsemblGenomes-Tr:F29G6.3b" /db_xref="UniProtKB/TrEMBL:Q93636" /db_xref="WormBase:WBGene00009259" intron_pos 10:1 (1/11) intron_pos 44:0 (2/11) intron_pos 62:0 (3/11) intron_pos 89:0 (4/11) intron_pos 111:0 (5/11) intron_pos 144:2 (6/11) intron_pos 184:0 (7/11) intron_pos 219:0 (8/11) intron_pos 253:0 (9/11) intron_pos 289:0 (10/11) intron_pos 1084:0 (11/11) BEGIN 1 MMETRNASDS LMDQVFSAVT LPAVGQTTTI MEHHQESHTV FHQESHHVES HHEHMEFSSS 61 GVIVGNVVGH DAVIQRRPTV DTEDQRSEVS AMSKATSVSV HSSVSQKSAQ HYDLPPIPQY 121 DMPPIVVGEA VVGKAPSVAS SRSGSHHSVA SHHSHHSQHS HHSALTHDSE STISEGTLVN 181 EPIVVGAHVA SEAPTPLAVG QSFEHDAVIE QFKNLHGRDQ SVVSSIVPAS VHIQSDSEDS 241 IAPSKLTHSI AVGGVVDSHN GVNVLHRSHE VEFVDFAAPA YYQPPSVVGA FDAHSEDSFG 301 FEKVEYVDTH EDHHHKLEEQ VPQVVHEHVI EQHYEPYQIV HENHNVLSVD FGEDQHSITH 361 HDHDHHHHHH ESHVTHTFTS NVKQSRSNTA STYQSRQMLA HNVGPKITEE LRPAAVLEEE 421 EVEVRPPVMA YVAPIPVKPP RTHEESHIYN AYETEIHQQK DIVKSTTVVL EDVRSGSEGI 481 HIRADNSSSV DIIGVSSLRR KFEHGAPPPL SPVFEMKKHE HHKHLDQHHH HKHQDVVVEQ 541 TQFQVGDNFI SSSSSKAIEN HYDVPFDSYE IVDKSENTKK SSSSYHASSS YHKQAPPLPL 601 VDYHVYDTPT VEHFSHSPAF YTDDQRHHYV PQIKVITEYR HINPRHHYVE RQIRKADGSA 661 IAQSPQVQTI DYFKEINRAH HFVPSTPPSL FNNKRESFHH HSFIPNSLEA ERKSRSVERA 721 HHYLPDSPAN VKDQRKIIRE HHYVPLEKRS QSLDLKVVHP EHHYVPLVRK TTEDHQQKVN 781 HEHHFIPAEK KTEAVKDVVH EHHYIPLTAH KTDEHNVNIT REHHYIPLKT EQVQSKTEIE 841 RHNQYVPMTT HKETKSFDTG RSHSYIPLGG NVEQSKTEIF RQHNFVPVVD KKEKNVEEIN 901 QKHNYVPAHS NVAVSDKEPI SRHHNFVPLA TKTVEETRHS NDLSHHHYMP LPAKREEGKT 961 AAGDKVGYEH HYYPLASNTE RVSVHKGQEH HYVPLIAKPT ESHASKIVIQ HQYIPLAMRH 1021 QSVPRLPSEH NYIPIAIHDD SHQKVDLTNH QYLPPIVNAE QKEAVKLYEH QYVPLPPKKD 1081 SFANYSSKAP QLPREHHYYP APVRSVEHHQ KHVHEQHNYI PAVHHHETNH QLDRQHGYIP 1141 VAAKHEAKKN VLYEHQYIPP ITRTEQTNGY DRRHNYVPVG KTAKATTTDI HVHQDHQYVP 1201 QASPRKTISE VNRSHNYIPA LPPKEHQSRH EHYQSHSYLP PSQKSTSHQS PPKLINHSFV 1261 PQIPHKTKDN QVVHEHGYVP PVKKSDLKTS VDHSKHEYLP SVVHTESKDD FKHSKHGYVP 1321 SLEHSQRIER GVVSTHNYVP PVTKIIEKNA SDPTKHGYLP QSKRSKSSDQ IDHSKHGFLP 1381 SIKHQEAQDH ADHSRHGYVP PTKKAHNDYW GFERDHHYVP DTLKKDKIKQ IHREHNFVPS 1441 VVPAKPDEKF EGQDHHYVPS VRKTTGITSE IEHRHNFVEK IPSKHETPKL PETHNYVPTV 1501 HKSQNLDRST LEKHNYVPTY QKKFEPRRTD IRHHNYVPTI VKPHEHRDNF DHHHYVPQIA 1561 KPSDVKLSDY DKHHYVPPVF EKSVVNQVEY EHKYTPTVVK STEPRILNHT QHHYTPSHQI 1621 VSNTYDDIDT HHGYLPQIPR KETAARVPLG HHFVPQIPHK EVAPDYDHHH HYVPSVQPKA 1681 PTPAVDYQHH YLPSVKKPTS TTTDMIRQQR KKILKSTDDD EDQENQYVAK PPVYTNAFVK 1741 PYKTIPDEPT NYMLKNGKSR NNGIPEEPSQ PVPKPRSFTS PQPDY //