LOCUS CAA94220.3 1263 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans P-GlycoProtein related protein.
ACCESSION BX284606-2576
PROTEIN_ID CAA94220.3
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="pgp-6"
/locus_tag="CELE_T21E8.1"
/standard_name="T21E8.1a"
/note="Product from WormBase gene class pgp"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004000"
/db_xref="EnsemblGenomes-Tr:T21E8.1a"
/db_xref="GOA:Q22656"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011527"
/db_xref="InterPro:IPR017871"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR036640"
/db_xref="InterPro:IPR039421"
/db_xref="UniProtKB/TrEMBL:Q22656"
/db_xref="WormBase:WBGene00004000"
intron_pos 32:0 (1/16)
intron_pos 84:1 (2/16)
intron_pos 121:0 (3/16)
intron_pos 165:2 (4/16)
intron_pos 264:2 (5/16)
intron_pos 322:0 (6/16)
intron_pos 360:0 (7/16)
intron_pos 565:0 (8/16)
intron_pos 595:0 (9/16)
intron_pos 627:1 (10/16)
intron_pos 722:0 (11/16)
intron_pos 843:0 (12/16)
intron_pos 878:0 (13/16)
intron_pos 921:0 (14/16)
intron_pos 1076:0 (15/16)
intron_pos 1144:0 (16/16)
BEGIN
1 MEENSNNFST PLLPQSDEKK PSQICSFIRV VFKCSSCFEK FLFLLGVLFS LMTGFCQPFM
61 SYTFGEVSQV LVTITNAINN KTIDPADLEK AYEEYERGMN QVVFHFFLCG CAYFIFASLQ
121 HAIMKYVGDN TTYRVRKQYI SRLLKKDAQY FDSVSTGHLS TVLNDNLERF REVFNEKIAL
181 IIAFVTDFTL GTALAFYTDW RLASYGIFFS LGIAFSGFIN SAGVMKTTGK QNTHYANAGS
241 IAFQTLGAYK TVCSLNGQKT EIERYTEELK AGEKYGIRRA LMYSISRGVT YFFCNSLNTV
301 VLYVGATMIY SGTLETAVVV RLFHYMLFGA FCLSEALPHI SRLAGAISST APIAEMLIKD
361 DNVIEKDETD YDVEVEVNGN ISFKNVKFSY PTRPDAQVLK GISFDVQNGE CIALVGASGS
421 GKSTVVQLLL HYYNIDSGNI FIDGMDLNDM NIKRLRRVIG VVSQEPVLFN TTIEENIRFG
481 NPNVSLPEIY GALRKANAYD FVCSFPKGIK TIVGERGTQL SGGQKQRIAI ARTLVRNPKI
541 LLLDEATSAL DNESEQVVQK ALENASQGRT TIVVAHRLST IRNASKIIVM QKGEIVEVGN
601 HDELIAKRGV YNDLVQAQLL ESHDDHEELP PLAARQLSQE LSPLHSYAIQ RSTSNDAGVH
661 DDDMERILDE LSKEGAKKSN LREIVKQCRP DYCFLFIAVF GSAIQGVSYP ILAQLIVRTY
721 EGFAMIGEDM LYYSHLWALS FMFLAVFRPL TLYCQYYYFG KVSEQLSTRL RIKSFSHMLS
781 LPCAFYDDPN HSATRLSNRL NTDSSNVKAA VDDRLGCVIM TVVAISIAIT TASLYCWKMT
841 LEVLMFFPLL YLAEYCYEAA TETAIQEDTI AFENSNRTAI EALENVRTVR ALNLEDKIMS
901 LISEHLQKIH KSYFKRAIIQ GAANGLSLSC FLFVYSVSFK FGTYLALRKE VAPMDTYLVL
961 MTLSMTANMA GSAAAYLPDY KKAVHAAGLI FHLFTYPATM PFSSSDGKKN IEKGEIIGEN
1021 VQFHYDQRPD RMILNGVNLK VDPGKTLALV GPSGCGKSTI ISLLERFYHA VDGEVKIDSE
1081 NVEDINLNHL RSNLALVSQE PTLFNCSIRE NLLYGLTRSV PQLELEKALQ TANAFNFVFQ
1141 FPQGLDTLVG ERGAQLSGGQ KQRIAIARAI LRNPKVLLLD EATSALDSDS EKVVQNALDT
1201 ASERLSTVVV AHRLSTVVNA DSIAVLKNGK VAEQGTHEEL LRKRSIYWRL VQKQGIQVET
1261 PSD
//