LOCUS CAA94220.3 1263 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans P-GlycoProtein related protein. ACCESSION BX284606-2576 PROTEIN_ID CAA94220.3 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="pgp-6" /locus_tag="CELE_T21E8.1" /standard_name="T21E8.1a" /note="Product from WormBase gene class pgp" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00004000" /db_xref="EnsemblGenomes-Tr:T21E8.1a" /db_xref="GOA:Q22656" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011527" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR036640" /db_xref="InterPro:IPR039421" /db_xref="UniProtKB/TrEMBL:Q22656" /db_xref="WormBase:WBGene00004000" intron_pos 32:0 (1/16) intron_pos 84:1 (2/16) intron_pos 121:0 (3/16) intron_pos 165:2 (4/16) intron_pos 264:2 (5/16) intron_pos 322:0 (6/16) intron_pos 360:0 (7/16) intron_pos 565:0 (8/16) intron_pos 595:0 (9/16) intron_pos 627:1 (10/16) intron_pos 722:0 (11/16) intron_pos 843:0 (12/16) intron_pos 878:0 (13/16) intron_pos 921:0 (14/16) intron_pos 1076:0 (15/16) intron_pos 1144:0 (16/16) BEGIN 1 MEENSNNFST PLLPQSDEKK PSQICSFIRV VFKCSSCFEK FLFLLGVLFS LMTGFCQPFM 61 SYTFGEVSQV LVTITNAINN KTIDPADLEK AYEEYERGMN QVVFHFFLCG CAYFIFASLQ 121 HAIMKYVGDN TTYRVRKQYI SRLLKKDAQY FDSVSTGHLS TVLNDNLERF REVFNEKIAL 181 IIAFVTDFTL GTALAFYTDW RLASYGIFFS LGIAFSGFIN SAGVMKTTGK QNTHYANAGS 241 IAFQTLGAYK TVCSLNGQKT EIERYTEELK AGEKYGIRRA LMYSISRGVT YFFCNSLNTV 301 VLYVGATMIY SGTLETAVVV RLFHYMLFGA FCLSEALPHI SRLAGAISST APIAEMLIKD 361 DNVIEKDETD YDVEVEVNGN ISFKNVKFSY PTRPDAQVLK GISFDVQNGE CIALVGASGS 421 GKSTVVQLLL HYYNIDSGNI FIDGMDLNDM NIKRLRRVIG VVSQEPVLFN TTIEENIRFG 481 NPNVSLPEIY GALRKANAYD FVCSFPKGIK TIVGERGTQL SGGQKQRIAI ARTLVRNPKI 541 LLLDEATSAL DNESEQVVQK ALENASQGRT TIVVAHRLST IRNASKIIVM QKGEIVEVGN 601 HDELIAKRGV YNDLVQAQLL ESHDDHEELP PLAARQLSQE LSPLHSYAIQ RSTSNDAGVH 661 DDDMERILDE LSKEGAKKSN LREIVKQCRP DYCFLFIAVF GSAIQGVSYP ILAQLIVRTY 721 EGFAMIGEDM LYYSHLWALS FMFLAVFRPL TLYCQYYYFG KVSEQLSTRL RIKSFSHMLS 781 LPCAFYDDPN HSATRLSNRL NTDSSNVKAA VDDRLGCVIM TVVAISIAIT TASLYCWKMT 841 LEVLMFFPLL YLAEYCYEAA TETAIQEDTI AFENSNRTAI EALENVRTVR ALNLEDKIMS 901 LISEHLQKIH KSYFKRAIIQ GAANGLSLSC FLFVYSVSFK FGTYLALRKE VAPMDTYLVL 961 MTLSMTANMA GSAAAYLPDY KKAVHAAGLI FHLFTYPATM PFSSSDGKKN IEKGEIIGEN 1021 VQFHYDQRPD RMILNGVNLK VDPGKTLALV GPSGCGKSTI ISLLERFYHA VDGEVKIDSE 1081 NVEDINLNHL RSNLALVSQE PTLFNCSIRE NLLYGLTRSV PQLELEKALQ TANAFNFVFQ 1141 FPQGLDTLVG ERGAQLSGGQ KQRIAIARAI LRNPKVLLLD EATSALDSDS EKVVQNALDT 1201 ASERLSTVVV AHRLSTVVNA DSIAVLKNGK VAEQGTHEEL LRKRSIYWRL VQKQGIQVET 1261 PSD //