LOCUS BBK55295.1 1407 aa PRT BCT 04-APR-2020
DEFINITION Escherichia coli O145:H28 RNA polymerase beta prime subunit
protein.
ACCESSION AP019706-4790
PROTEIN_ID BBK55295.1
SOURCE Escherichia coli O145:H28
ORGANISM Escherichia coli O145:H28
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 5488534)
AUTHORS Nakamura,K., Murase,K., Toyoda,A., Itoh,T., Yoshino,S., Lee,K.,
Iyoda,S., Ohnishi,M., Ooka,T., Ogura,Y. and Hayashi,T.
TITLE Direct Submission
JOURNAL Submitted (04-JUN-2019) to the DDBJ/EMBL/GenBank databases.
Contact:Keiji Nakamura
Faculty of Medical Sciences, Kyushu University; Higashi-ku
Maidashi 3-1-1, Fukuoka, Fukuoka 812-8582, Japan
REFERENCE 2
AUTHORS Nakamura,K., Murase,K., Sato,M.P., Toyoda,A., Itoh,T.,
Mainil,J.G., Pierard,D., Yoshino,S., Kimata,K., Isobe,J., Seto,K.,
Etoh,Y., Narimatsu,H., Saito,S., Yatsuyanagi,J., Lee,K., Iyoda,S.,
Ohnishi,M., Ooka,T., Gotoh,Y., Ogura,Y. and Hayashi,T.
TITLE Differential dynamics and impacts of prophages and plasmids on the
pangenome and virulence factor repertoires of Shiga
toxin-producing Escherichia coli O145:H28
JOURNAL Microb Genom 6, e000323 (2020)
REMARK Publication Status: Online-Only
DOI:10.1099/mgen.0.000323
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Canu v. 1.5
Genome Coverage :: 150x
Sequencing Technology :: Illumina MiSeq; PacBio RS II
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /collection_date="2011"
/country="Japan:Fukushima"
/db_xref="taxon:1078034"
/isolation_source="human feces"
/mol_type="genomic DNA"
/organism="Escherichia coli O145:H28"
/serovar="O145:H28"
/strain="112648"
protein /EC_number="2.7.7.6"
/gene="rpoC"
/inference="ab initio prediction:Prodigal:2.6"
/inference="similar to AA sequence:INSD:AAC76962.1"
/locus_tag="EC112648_4790"
/transl_table=11
BEGIN
1 MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
61 IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL
121 PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERQQIL TEEQYLDALE EFGDEFDAKM
181 GAEAIQALLK SMDLEQECEQ LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT
241 VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
301 EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
361 LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP
421 VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
481 RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERLYRSG
541 LASLHARVKV RITEYEKDAN GELVAKTSLK DTTVGRAILW MIVPKGLPYS IVNQALGKKA
601 ISKMLNTCYR ILGLKPTVIF ADQIMYTGFA YAARSGASVG IDDMVIPEKK HEIISEAEAE
661 VAEIQEQFQS GLVTAGERYN KVIDIWAAAN DRVSKAMMDN LQTETVINRD GQEEKQVSFN
721 SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
781 KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHEGI MMTPVIEGGD VKEPLRDRVL
841 GRVTAEDVLK PGTADILVPR NTLLHEQWCD LLEENSVDAV KVRSVVSCDT DFGVCAHCYG
901 RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSIKL
961 SNVKSVVNSS GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVLAKGDGEQ VAGGETVANW
1021 DPHTMPVITE VSGFVRFTDM IDGQTITRQT DELTGLSSLV VLDSAERTAG GKDLRPALKI
1081 VDAQGNDVLI PGTDMPAQYF LPGKAIVQLE DGVQISSGDT LARIPQESGG TKDITGGLPR
1141 VADLFEARRP KEPAILAEIS GIVSFGKETK GKRRLVITPV DGSDPYEEMI PKWRQLNVFE
1201 GERVERGDVI SDGPEAPHDI LRLRGVHAVT RYIVNEVQDV YRLQGVKIND KHIEVIVRQM
1261 LRKATIVNAG SSDFLEGEQV EYSRVKIANR ELEANGKVGA TYSRDLLGIT KASLATESFI
1321 SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRAAGEAPA
1381 VPQVTAEDAS ASLAELLNAG LGGSDNE
//