LOCUS       BBK55295.1              1407 aa    PRT              BCT 04-APR-2020
DEFINITION  Escherichia coli O145:H28 RNA polymerase beta prime subunit
            protein.
ACCESSION   AP019706-4790
PROTEIN_ID  BBK55295.1
SOURCE      Escherichia coli O145:H28
  ORGANISM  Escherichia coli O145:H28
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 5488534)
  AUTHORS   Nakamura,K., Murase,K., Toyoda,A., Itoh,T., Yoshino,S., Lee,K.,
            Iyoda,S., Ohnishi,M., Ooka,T., Ogura,Y. and Hayashi,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2019) to the DDBJ/EMBL/GenBank databases.
            Contact:Keiji Nakamura
            Faculty of Medical Sciences, Kyushu University; Higashi-ku
            Maidashi 3-1-1, Fukuoka, Fukuoka 812-8582, Japan
REFERENCE   2  
  AUTHORS   Nakamura,K., Murase,K., Sato,M.P., Toyoda,A., Itoh,T.,
            Mainil,J.G., Pierard,D., Yoshino,S., Kimata,K., Isobe,J., Seto,K.,
            Etoh,Y., Narimatsu,H., Saito,S., Yatsuyanagi,J., Lee,K., Iyoda,S.,
            Ohnishi,M., Ooka,T., Gotoh,Y., Ogura,Y. and Hayashi,T.
  TITLE     Differential dynamics and impacts of prophages and plasmids on the
            pangenome and virulence factor repertoires of Shiga
            toxin-producing Escherichia coli O145:H28
  JOURNAL   Microb Genom 6, e000323 (2020)
  REMARK    Publication Status: Online-Only
            DOI:10.1099/mgen.0.000323
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: Canu v. 1.5
            Genome Coverage       :: 150x
            Sequencing Technology :: Illumina MiSeq; PacBio RS II
            ##Genome-Assembly-Data-END##
FEATURES             Qualifiers
     source          /collection_date="2011"
                     /country="Japan:Fukushima"
                     /db_xref="taxon:1078034"
                     /isolation_source="human feces"
                     /mol_type="genomic DNA"
                     /organism="Escherichia coli O145:H28"
                     /serovar="O145:H28"
                     /strain="112648"
     protein         /EC_number="2.7.7.6"
                     /gene="rpoC"
                     /inference="ab initio prediction:Prodigal:2.6"
                     /inference="similar to AA sequence:INSD:AAC76962.1"
                     /locus_tag="EC112648_4790"
                     /transl_table=11
BEGIN
        1 MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
       61 IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL
      121 PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERQQIL TEEQYLDALE EFGDEFDAKM
      181 GAEAIQALLK SMDLEQECEQ LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT
      241 VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
      301 EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
      361 LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP
      421 VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
      481 RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERLYRSG
      541 LASLHARVKV RITEYEKDAN GELVAKTSLK DTTVGRAILW MIVPKGLPYS IVNQALGKKA
      601 ISKMLNTCYR ILGLKPTVIF ADQIMYTGFA YAARSGASVG IDDMVIPEKK HEIISEAEAE
      661 VAEIQEQFQS GLVTAGERYN KVIDIWAAAN DRVSKAMMDN LQTETVINRD GQEEKQVSFN
      721 SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
      781 KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHEGI MMTPVIEGGD VKEPLRDRVL
      841 GRVTAEDVLK PGTADILVPR NTLLHEQWCD LLEENSVDAV KVRSVVSCDT DFGVCAHCYG
      901 RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSIKL
      961 SNVKSVVNSS GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVLAKGDGEQ VAGGETVANW
     1021 DPHTMPVITE VSGFVRFTDM IDGQTITRQT DELTGLSSLV VLDSAERTAG GKDLRPALKI
     1081 VDAQGNDVLI PGTDMPAQYF LPGKAIVQLE DGVQISSGDT LARIPQESGG TKDITGGLPR
     1141 VADLFEARRP KEPAILAEIS GIVSFGKETK GKRRLVITPV DGSDPYEEMI PKWRQLNVFE
     1201 GERVERGDVI SDGPEAPHDI LRLRGVHAVT RYIVNEVQDV YRLQGVKIND KHIEVIVRQM
     1261 LRKATIVNAG SSDFLEGEQV EYSRVKIANR ELEANGKVGA TYSRDLLGIT KASLATESFI
     1321 SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRAAGEAPA
     1381 VPQVTAEDAS ASLAELLNAG LGGSDNE
//