LOCUS BAD82628.1 759 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group aminotransferase-like protein protein.
ACCESSION AP003794-14
PROTEIN_ID BAD82628.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 150381)
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Direct Submission
JOURNAL Submitted (27-JUN-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T., Yamamoto,K., Sakata,K., Baba,T.,
Katayose,Y., Wu,J., Niimura,Y., Cheng,Z., Nagamura,Y.,
Antonio,B.A., Kanamori,H., Hosokawa,S., Masukawa,M., Arikawa,K.,
Chiden,Y., Hayashi,M., Okamoto,M., Ando,T., Aoki,H., Arita,K.,
Hamada,M., Harada,C., Hijishita,S., Honda,M., Ichikawa,Y.,
Idonuma,A., Iijima,M., Ikeda,M., Ikeno,M., Itoh,S., Itoh,T.,
Itoh,Y., Itoh,Y., Iwabuchi,A., Kamiya,K., Karasawa,W.,
Katagiri,S., Kikuta,A., Kobayashi,N., Kono,I., Machita,K.,
Maehara,T., Mizuno,H., Mizubayashi,T., Mukai,Y., Nagasaki,H.,
Nakashima,M., Nakama,Y., Nakamichi,Y., Nakamura,M., Namiki,N.,
Negishi,M., Ohta,I., Ono,N., Saji,S., Sakai,K., Shibata,M.,
Shimokawa,T., Shomura,A., Song,J., Takazaki,Y., Terasawa,K.,
Tsuji,K., Waki,K., Yamagata,H., Yamane,H., Yoshiki,S.,
Yoshihara,R., Yukawa,K., Zhong,H., Iwama,H., Endo,T., Ito,H.,
Hahn,J.H., Kim,H.I., Eun,M.Y., Yano,M., Jiang,J. and Gojobori,T.
TITLE The genome sequence and structure of rice chromosome 1
JOURNAL Nature 420, 312-316 (2002)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from SP6 to T7 of the PAC
clone. This sequence of P0489B03 clone has an overlap with
P0683F02 (DDBJ: AP003289) clone at 5' end and an overlap with
P0679C12 (DDBJ: AP003287) clone at 3' end. Detailed information on
overlap and assembly quality together with annotation of this
entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="1"
/clone="P0489B03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="P0489B03.18"
intron_pos 18:0 (1/7)
intron_pos 134:2 (2/7)
intron_pos 423:0 (3/7)
intron_pos 537:0 (4/7)
intron_pos 550:0 (5/7)
intron_pos 587:0 (6/7)
intron_pos 683:0 (7/7)
BEGIN
1 MPSSTSPSTA PSAEYAEKNT FKSWPSLEKP TPDKSWTTWY QRISASKKTH WDEIGIGQAL
61 ALTIANSAKD EPLMATATYF WSNTINAFLF NQGPMTPTLI DIIMIIGLDV ISSANPMSMN
121 TKNQFDFKTK SIGGCGPTTN WQFVAEALES KKQFPLGKIL LGYLYQMLNN ASAKIAVGSI
181 VGAGGPWWLL QTWLNLVVMK VVNRPSVTEA EFPRLEPIVE DDGEERTHRR CMSYGEYAST
241 PADAGAKLSA ELLKDWFCSF YEGFQKDARV WFLYEDSADL ELPLDFRFED INHERYQTSR
301 EVFTAAISPC ILPVGIHQGR NIQVSYEFYH PMSSARQLGL GQLPIGLFFA DKIQCRGEIS
361 STLMMDRLLN LQGPPVGSID NIELAGFRSR NFDRWWGEWK LHLFHQSTTM YMTDLFPDVI
421 PQTTESSPPH QSNSGRNIEY APGLIPNGGG LSPPVIGYHA PKVLTLLQGA IREPTDVTKK
481 RKTRSSAVST LTLAPKKKAK SKKTKPTDDL PALDPSIEQA LDEADIEDDV EQAAAEKKKT
541 AIKKKSAPPP PPPPSPVQQS SSDRTPSAVG SHHIVEEEQP AAPAIPAEED TSSKALAPLS
601 DDAKKTLEDI SRRLETSSLD SLVVDCGSIR TRLHEVQALI PEELADVLTP ATYLEQHQFK
661 LEKAKLRLAE RREHKEIEAT IQLEECNVEL DMEHKKLADL PISVEEQKTR LKSAIKNVAD
721 LTKSLKIIPG TDAQDAQAIE EVEQIRQKAI SAIQQYLSQ
//