LOCUS BAD82628.1 759 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group aminotransferase-like protein protein. ACCESSION AP003794-14 PROTEIN_ID BAD82628.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 150381) AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Direct Submission JOURNAL Submitted (27-JUN-2001) to the DDBJ/EMBL/GenBank databases. Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T., Yamamoto,K., Sakata,K., Baba,T., Katayose,Y., Wu,J., Niimura,Y., Cheng,Z., Nagamura,Y., Antonio,B.A., Kanamori,H., Hosokawa,S., Masukawa,M., Arikawa,K., Chiden,Y., Hayashi,M., Okamoto,M., Ando,T., Aoki,H., Arita,K., Hamada,M., Harada,C., Hijishita,S., Honda,M., Ichikawa,Y., Idonuma,A., Iijima,M., Ikeda,M., Ikeno,M., Itoh,S., Itoh,T., Itoh,Y., Itoh,Y., Iwabuchi,A., Kamiya,K., Karasawa,W., Katagiri,S., Kikuta,A., Kobayashi,N., Kono,I., Machita,K., Maehara,T., Mizuno,H., Mizubayashi,T., Mukai,Y., Nagasaki,H., Nakashima,M., Nakama,Y., Nakamichi,Y., Nakamura,M., Namiki,N., Negishi,M., Ohta,I., Ono,N., Saji,S., Sakai,K., Shibata,M., Shimokawa,T., Shomura,A., Song,J., Takazaki,Y., Terasawa,K., Tsuji,K., Waki,K., Yamagata,H., Yamane,H., Yoshiki,S., Yoshihara,R., Yukawa,K., Zhong,H., Iwama,H., Endo,T., Ito,H., Hahn,J.H., Kim,H.I., Eun,M.Y., Yano,M., Jiang,J. and Gojobori,T. TITLE The genome sequence and structure of rice chromosome 1 JOURNAL Nature 420, 312-316 (2002) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from SP6 to T7 of the PAC clone. This sequence of P0489B03 clone has an overlap with P0683F02 (DDBJ: AP003289) clone at 5' end and an overlap with P0679C12 (DDBJ: AP003287) clone at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="1" /clone="P0489B03" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="P0489B03.18" intron_pos 18:0 (1/7) intron_pos 134:2 (2/7) intron_pos 423:0 (3/7) intron_pos 537:0 (4/7) intron_pos 550:0 (5/7) intron_pos 587:0 (6/7) intron_pos 683:0 (7/7) BEGIN 1 MPSSTSPSTA PSAEYAEKNT FKSWPSLEKP TPDKSWTTWY QRISASKKTH WDEIGIGQAL 61 ALTIANSAKD EPLMATATYF WSNTINAFLF NQGPMTPTLI DIIMIIGLDV ISSANPMSMN 121 TKNQFDFKTK SIGGCGPTTN WQFVAEALES KKQFPLGKIL LGYLYQMLNN ASAKIAVGSI 181 VGAGGPWWLL QTWLNLVVMK VVNRPSVTEA EFPRLEPIVE DDGEERTHRR CMSYGEYAST 241 PADAGAKLSA ELLKDWFCSF YEGFQKDARV WFLYEDSADL ELPLDFRFED INHERYQTSR 301 EVFTAAISPC ILPVGIHQGR NIQVSYEFYH PMSSARQLGL GQLPIGLFFA DKIQCRGEIS 361 STLMMDRLLN LQGPPVGSID NIELAGFRSR NFDRWWGEWK LHLFHQSTTM YMTDLFPDVI 421 PQTTESSPPH QSNSGRNIEY APGLIPNGGG LSPPVIGYHA PKVLTLLQGA IREPTDVTKK 481 RKTRSSAVST LTLAPKKKAK SKKTKPTDDL PALDPSIEQA LDEADIEDDV EQAAAEKKKT 541 AIKKKSAPPP PPPPSPVQQS SSDRTPSAVG SHHIVEEEQP AAPAIPAEED TSSKALAPLS 601 DDAKKTLEDI SRRLETSSLD SLVVDCGSIR TRLHEVQALI PEELADVLTP ATYLEQHQFK 661 LEKAKLRLAE RREHKEIEAT IQLEECNVEL DMEHKKLADL PISVEEQKTR LKSAIKNVAD 721 LTKSLKIIPG TDAQDAQAIE EVEQIRQKAI SAIQQYLSQ //