LOCUS BAD15896.1 646 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group PPR-repeat protein-like protein.
ACCESSION AP004880-10
PROTEIN_ID BAD15896.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 161531)
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Direct Submission
JOURNAL Submitted (20-MAR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, PAC
clone:P0487D09
JOURNAL Published Only in Database(2002)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from SP6 to T7 of the PAC
clone. This sequence of P0487D09 clone has an overlap with
P0643A10 (DDBJ: AP005319) clone at 5' end and with P0684F11 (DDBJ:
AP005112) at 3' end. Detailed information on overlap and assembly
quality together with annotation of this entry is available at
http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="2"
/clone="P0487D09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="P0487D09.14"
/note="contains full-length cDNA(s): AK065002"
BEGIN
1 MDSCRLLHPY PQPLPLPPPP PPPTSTPRPT HLQWGVLRRR RRRHHFLRCV AASAATLQKE
61 LTVPRTPTAA QSPGPVNPPT LFDRMPERSV ATVSAADNLL DEMSRTCGAG QRGRPLEAPP
121 RDGGGKSASA AIVALAHAGR HAEVVELFCR MRRGGVPVSR FVLPSVLAAC AGLRDIGMLR
181 AVHALVIKCG LCQHVIVGTA LVDGYTDFGL VDDARKAFDE ITDANIVSWS VLIGGYARSS
241 RWEETLDAFS AMRRAGVLPN DSVLVMAIQA CGALGRLVHG KQLHGLAVVL GFDRNATVWN
301 CLMDMYGKCG DIDSCKMVFE TMIGRDQVSW NTLISSYARV GLCEEALDMI VQMQESGYIV
361 DRFTLGSGVT ACARLADIDS GRAFHGYLVR RLLDTDVIQG SALVDMYGKC HNMELAHIVF
421 DRMDERNYVS WDALLSGYVE NEQVDLALEI FRQMGCANIK YNQHNFANLL KLCGSQRYKE
481 YGRQIHGHAI KTINKMNVVL ETELIDMYAK CGCIEVARLL FLRMNERNLI SWNALLSGYA
541 ADGQPVATIN IYRQMELACI RPDKYTLAGL LSLCRYQGLL HYGRQIHAHL IKMGSEMNVV
601 MQTILVHMYI KCMRQQDAEN VCIMIEERNS YVLDAFSKVY GDDYLI
//