LOCUS       BAD15896.1               646 aa    PRT              PLN 16-FEB-2008
DEFINITION  Oryza sativa Japonica Group PPR-repeat protein-like protein.
ACCESSION   AP004880-10
PROTEIN_ID  BAD15896.1
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 161531)
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Takuji Sasaki
            National Institute of Agrobiological Sciences, Rice Genome
            Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
            URL    :http://rgp.dna.affrc.go.jp/
REFERENCE   2  
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, PAC
            clone:P0487D09
  JOURNAL   Published Only in Database(2002)
COMMENT     Genes were predicted from the integrated results of the following:
            GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
            (http://www.softberry.com/), GeneMark.hmm
            (http://opal.biology.gatech.edu/GeneMark/), GlimmerM
            (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
            (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
            (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
            (http://globin.cse.psu.edu/html/docs/sim4.html), gap2
            (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
            genomic sequence was searched against NCBI NonRedundant Protein
            database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
            sequence database at RGP or DDBJ. Protein homologies of the coding
            regions were searched against NCBI NonRedundant Protein database
            with BLASTP. ESTs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
            Full-length cDNAs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no.
            
            A gene with identity or significant homology to a protein is
            classified based on the protein name to indicate the homology
            level such as same name, 'putative-' and '-like protein'.  A gene
            without significant homology to any protein but with full-length
            cDNA or EST homology (covering almost the entire length of partial
            sequence) is classified as an 'unknown' protein. A gene predicted
            by two or more gene prediction programs is classified as a
            'hypothetical' protein according to IRGSP standard. A gene
            predicted by a single gene prediction program is also classified
            as a probable 'hypothetical' protein and is included as a
            miscellaneous feature of the sequence.
            
            The orientation of the sequence is from SP6 to T7 of the PAC
            clone. This sequence of P0487D09 clone has an overlap with
            P0643A10 (DDBJ: AP005319) clone at 5' end and with P0684F11 (DDBJ:
            AP005112) at 3' end. Detailed information on overlap and assembly
            quality together with annotation of this entry is available at
            http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES             Qualifiers
     source          /chromosome="2"
                     /clone="P0487D09"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="genomic DNA"
                     /organism="Oryza sativa Japonica Group"
     protein         /gene="P0487D09.14"
                     /note="contains full-length cDNA(s): AK065002"
BEGIN
        1 MDSCRLLHPY PQPLPLPPPP PPPTSTPRPT HLQWGVLRRR RRRHHFLRCV AASAATLQKE
       61 LTVPRTPTAA QSPGPVNPPT LFDRMPERSV ATVSAADNLL DEMSRTCGAG QRGRPLEAPP
      121 RDGGGKSASA AIVALAHAGR HAEVVELFCR MRRGGVPVSR FVLPSVLAAC AGLRDIGMLR
      181 AVHALVIKCG LCQHVIVGTA LVDGYTDFGL VDDARKAFDE ITDANIVSWS VLIGGYARSS
      241 RWEETLDAFS AMRRAGVLPN DSVLVMAIQA CGALGRLVHG KQLHGLAVVL GFDRNATVWN
      301 CLMDMYGKCG DIDSCKMVFE TMIGRDQVSW NTLISSYARV GLCEEALDMI VQMQESGYIV
      361 DRFTLGSGVT ACARLADIDS GRAFHGYLVR RLLDTDVIQG SALVDMYGKC HNMELAHIVF
      421 DRMDERNYVS WDALLSGYVE NEQVDLALEI FRQMGCANIK YNQHNFANLL KLCGSQRYKE
      481 YGRQIHGHAI KTINKMNVVL ETELIDMYAK CGCIEVARLL FLRMNERNLI SWNALLSGYA
      541 ADGQPVATIN IYRQMELACI RPDKYTLAGL LSLCRYQGLL HYGRQIHAHL IKMGSEMNVV
      601 MQTILVHMYI KCMRQQDAEN VCIMIEERNS YVLDAFSKVY GDDYLI
//