LOCUS BAC83909.1 1052 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group putative leaf development
protein Argonaute protein.
ACCESSION AP005179-9
PROTEIN_ID BAC83909.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 127992)
AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y.
TITLE Direct Submission
JOURNAL Submitted (15-MAY-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 7, BAC
clone:OSJNBb0084L07
JOURNAL Published Only in Database(2002)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from M13rev to -21M13 of the
BAC clone. This sequence of OSJNBb0084L07 clone has an overlap
with P0506C07 (DDBJ: AP004384) clone at 5' end and with
OSJNBb0002L09 (DDBJ: AP005877) at 3' end. Detailed information on
overlap and assembly quality together with annotation of this
entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="7"
/clone="OSJNBb0084L07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="OSJNBb0084L07.14"
/note="contains full-length cDNA(s): AK100285"
intron_pos 227:0 (1/21)
intron_pos 292:2 (2/21)
intron_pos 339:2 (3/21)
intron_pos 383:1 (4/21)
intron_pos 426:0 (5/21)
intron_pos 460:2 (6/21)
intron_pos 505:0 (7/21)
intron_pos 544:0 (8/21)
intron_pos 580:0 (9/21)
intron_pos 604:0 (10/21)
intron_pos 644:0 (11/21)
intron_pos 690:1 (12/21)
intron_pos 732:0 (13/21)
intron_pos 775:0 (14/21)
intron_pos 835:2 (15/21)
intron_pos 857:2 (16/21)
intron_pos 879:0 (17/21)
intron_pos 924:1 (18/21)
intron_pos 949:0 (19/21)
intron_pos 980:2 (20/21)
intron_pos 991:1 (21/21)
BEGIN
1 MASRGGDGLV GGGRGPLGGR DGRGRGPAGG RGGGRGGGHP QQQQQQQPGY GRGDGGGRGP
61 APAAGGVVGR GTGGGGGGGR GDGGRGRGRG GGGGDGVRPA MAAAPAASTP GPVAVAARST
121 PPPTPAVQIP AVASSSSAQP AAAAQPPPAA AAVSALARDV GRQLAVVAGG GRPAPPAAPP
181 APIPVSSKGV APPSRPGFGT VGERIVVRAN HFLVRVSDND MIYLYDVSLS PPPKTRRINR
241 VVMSELARLH RESHLGGISF AYDGSKALYT AGKLPFDSMD FKIKLGKELR EIEYKVTIRR
301 AGQADLHHLH EFIAGRQRDS QQQTIQALDV VLRESPSLNY VIVSRSFYST MFGRQDIGDG
361 LECWKGYYQS LRPTQMGLSL NIDISSTPFF KPISVVEYVK NCLGTPTNAN GPDPRRPLSD
421 IDRLKVKKAL RGVRVETTHQ GKSSKYKITT ITSEPLSQLN FSMDGTTQTV IQYFSQRYKY
481 RLQYTSWPCL QSGNPSNPIY LPMEVCTIVE GQRYSKKLND KQVTGLLRAT CQPPQKREQK
541 IIEMVQHNNY PADKVVSDFR INISNQMATM PARVLPAPTL RYHDSGKEKT CNPRVGQWNM
601 INKKMVGGAV VQKWTCVNFS RMHIDAVHRL CGELVYTCNA IGMVFNEMPE IEVGSAAPNN
661 IEAALSNIHT RAPQLQLLIV ILPDVNGYYG RIKRVCETEL GIVSQCLKPG RKLLSLDRQF
721 LENVSLKINV KAGGRNSVLQ RPLVPGGLEN TTIIFGADVT HPASGEDSSA SIAAVVASMD
781 WPEITKYKAL VSAQPPRQEI IQDLFTMTEV AQNADAPAQK AEGSKKNFIC GGMFRELLMS
841 FYSKNAKRKP QRIIFYRDGV SDGQFLHVLL YEMDAIKKAI ASLDPAYRPL VTFVVVQKRH
901 HTRLFPEVHG RQDLTDRSGN VRPGTVVDTN ICHPSEFDFY LCSHAGIQGT SRPTHYHVLH
961 DENRFSADQL QMLTYNLCYT YARCTRSVSV VPPAYYAHLA AFRARYYDEP PAMDGASSVG
1021 SGGNQAAAGG QPPAVRRLPQ IKENVKDVMF YC
//