LOCUS ANI08291.1 1481 aa PRT BCT 02-JUN-2016
DEFINITION Pseudomonas aeruginosa SJTD-1 glutamate synthase large
subunit protein.
ACCESSION CP015877-1486
PROTEIN_ID ANI08291.1
SOURCE Pseudomonas aeruginosa SJTD-1
ORGANISM Pseudomonas aeruginosa SJTD-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6243825)
AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
bacterium capable of degrading long-chain alkanes and crude oil
JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012)
PUBMED 22887679
REFERENCE 2 (bases 1 to 6243825)
AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
China
REFERENCE 3 (bases 1 to 6243825)
AUTHORS Liang,R.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
China
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Rubing Liang (School of Life
Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
200240, China).
##Genome-Assembly-Data-START##
Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 200x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/25/2016 16:12:59
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,696
CDS (total) :: 5,617
Genes (coding) :: 5,603
CDS (coding) :: 5,603
Genes (RNA) :: 79
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 4
Pseudo Genes (total) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 7 of 14
Pseudo Genes (internal stop) :: 3 of 14
Pseudo Genes (multiple problems) :: 1 of 14
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa SJTD-1"
/mol_type="genomic DNA"
/strain="SJTD-1"
/isolation_source="soil"
/db_xref="taxon:1193501"
/country="China: Shanghai"
protein /locus_tag="A214_07525"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_017363393.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MKAGLYHPET FKDNCGFGLI AHMQGEPSHQ LLQTAIEALT CMTHRGGINA DGKTGDGCGL
61 LIQKPDLFLR AVAREAFSVD LPEQYAVGMV FFNQDPVKAE AARENMNREI VAAGLELVGW
121 RKVPIDTSVL GRLALERLPQ IEQVFIGGAG LSDQDFAIKL FSARRRSSVA NAADSDHYIC
181 SFSHKTIIYK GLMMPADLAA FYPDLGDERL QTAICVFHQR FSTNTLPKWP LAQPFRFLAH
241 NGEINTITGN RNWAQARRTK FTNELIPDLE ELGPLVNRVG SDSSSMDNML ELMVTGGMDL
301 FRGLRMIIPP AWQNVETMDA DLRAFYEYNS LHMEPWDGPA GVVLTDGRYA VCLLDRNGLR
361 PSRWVTTKNG YITLASEIGV WDYKPEDVIA KGRVGPGQIL AVDTETGQVL HSDDIDNRLK
421 SRHPYKQWLR QNALRIQATL DDDHGVASYD ADQLKQFMKM FQVTFEERDQ VLRPLGEQGQ
481 EAVGSMGDDT PMAILSRRIR SPYDYFRQQF AQVTNPPIDP LREAIVMSLE TCLGVEQNIF
541 EEAPHHANQA ILTTPVISPA KWRTIMTLDR PGFDRHFIDL NYDESMGLEA AVRNIADQAE
601 EAVRGGRVLL ILSDRHIAPG KLPVHAALAV GAVHHRLVQT GLRCDSNILV ETATARDPHH
661 FAVLIGFGAS AVYPFLAYEV LADLIRTGEV LGDLYEVFKY YRKGISKGLM KILSKMGIST
721 VASYRGAQLF EAVGLSDEVT DLCFTGVASR IQGARFVDIE NEQKLLAAEA WSNRKPIQQG
781 GLLKFVYGGE YHAYNPDVVN TLQAAVQQGD YEKFKEYTAL VDQRPVSMIR DLLQVKTAAQ
841 PLALDEVEPL EAIFKRFDAA GISLGALSPE AHEALAEAMN TLGGRSNSGE GGEDPARYGT
901 LKSSKIKQVA TGRFGVTPEY LVNAEVLQIK VAQGAKPGEG GQLPGGKVNG LIARLRYAVP
961 GVTLISPPPH HDIYSIEDLA QLIFDLKQVN PQALVSVKLV SEPGVGTIAA GVAKAYADLI
1021 TISGYDGGTG ASPITSIKYA GSPWELGLAE THQTLRGNDL RGKVRVQTDG GLKTGLDVIK
1081 AAILGAESFG FGTAPMIALG CKYLRICHLN NCATGVATQN DKLRKDHFIG TTAMVINFFT
1141 FIATETREWL ARLGVRSLGE LIGRTDLLEI LPGETAKQQN LDLAPLLGSE LIPADKPQFC
1201 EVEKNPPFDQ GLLAEKMVEL SKAAIEGLSG GEYELDICNC DRSIGARVSG EIARLHGNQG
1261 MAKAPVVFRF KGTAGQSFGV WNAGGLHLYL EGDANDYVGK GMTGGKLVIT PPKGSPFKTQ
1321 ESAIVGNTCL YGATGGKLFA AGTAGERFAV RNSGSHAVVE GTGDHCCEYM TGGFVCVLGK
1381 TGYNFGSGMT GGFAYVLDMD NTFVDRVNHE LVEIQRISGE AMEAYRSHLR KVLVEYVNET
1441 ASEWGANILE NLDDYLRRFW LVKPKAASLG SLLTSTRANP Q
//