LOCUS ANI08291.1 1481 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 glutamate synthase large subunit protein. ACCESSION CP015877-1486 PROTEIN_ID ANI08291.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_07525" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_017363393.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKAGLYHPET FKDNCGFGLI AHMQGEPSHQ LLQTAIEALT CMTHRGGINA DGKTGDGCGL 61 LIQKPDLFLR AVAREAFSVD LPEQYAVGMV FFNQDPVKAE AARENMNREI VAAGLELVGW 121 RKVPIDTSVL GRLALERLPQ IEQVFIGGAG LSDQDFAIKL FSARRRSSVA NAADSDHYIC 181 SFSHKTIIYK GLMMPADLAA FYPDLGDERL QTAICVFHQR FSTNTLPKWP LAQPFRFLAH 241 NGEINTITGN RNWAQARRTK FTNELIPDLE ELGPLVNRVG SDSSSMDNML ELMVTGGMDL 301 FRGLRMIIPP AWQNVETMDA DLRAFYEYNS LHMEPWDGPA GVVLTDGRYA VCLLDRNGLR 361 PSRWVTTKNG YITLASEIGV WDYKPEDVIA KGRVGPGQIL AVDTETGQVL HSDDIDNRLK 421 SRHPYKQWLR QNALRIQATL DDDHGVASYD ADQLKQFMKM FQVTFEERDQ VLRPLGEQGQ 481 EAVGSMGDDT PMAILSRRIR SPYDYFRQQF AQVTNPPIDP LREAIVMSLE TCLGVEQNIF 541 EEAPHHANQA ILTTPVISPA KWRTIMTLDR PGFDRHFIDL NYDESMGLEA AVRNIADQAE 601 EAVRGGRVLL ILSDRHIAPG KLPVHAALAV GAVHHRLVQT GLRCDSNILV ETATARDPHH 661 FAVLIGFGAS AVYPFLAYEV LADLIRTGEV LGDLYEVFKY YRKGISKGLM KILSKMGIST 721 VASYRGAQLF EAVGLSDEVT DLCFTGVASR IQGARFVDIE NEQKLLAAEA WSNRKPIQQG 781 GLLKFVYGGE YHAYNPDVVN TLQAAVQQGD YEKFKEYTAL VDQRPVSMIR DLLQVKTAAQ 841 PLALDEVEPL EAIFKRFDAA GISLGALSPE AHEALAEAMN TLGGRSNSGE GGEDPARYGT 901 LKSSKIKQVA TGRFGVTPEY LVNAEVLQIK VAQGAKPGEG GQLPGGKVNG LIARLRYAVP 961 GVTLISPPPH HDIYSIEDLA QLIFDLKQVN PQALVSVKLV SEPGVGTIAA GVAKAYADLI 1021 TISGYDGGTG ASPITSIKYA GSPWELGLAE THQTLRGNDL RGKVRVQTDG GLKTGLDVIK 1081 AAILGAESFG FGTAPMIALG CKYLRICHLN NCATGVATQN DKLRKDHFIG TTAMVINFFT 1141 FIATETREWL ARLGVRSLGE LIGRTDLLEI LPGETAKQQN LDLAPLLGSE LIPADKPQFC 1201 EVEKNPPFDQ GLLAEKMVEL SKAAIEGLSG GEYELDICNC DRSIGARVSG EIARLHGNQG 1261 MAKAPVVFRF KGTAGQSFGV WNAGGLHLYL EGDANDYVGK GMTGGKLVIT PPKGSPFKTQ 1321 ESAIVGNTCL YGATGGKLFA AGTAGERFAV RNSGSHAVVE GTGDHCCEYM TGGFVCVLGK 1381 TGYNFGSGMT GGFAYVLDMD NTFVDRVNHE LVEIQRISGE AMEAYRSHLR KVLVEYVNET 1441 ASEWGANILE NLDDYLRRFW LVKPKAASLG SLLTSTRANP Q //