LOCUS AKO89879.1 4180 aa PRT BCT 27-AUG-2015
DEFINITION Pseudomonas aeruginosa DSM 50071 = NBRC 12689 hemagglutinin
protein.
ACCESSION CP012001-4370
PROTEIN_ID AKO89879.1
SOURCE Pseudomonas aeruginosa DSM 50071 = NBRC 12689
ORGANISM Pseudomonas aeruginosa DSM 50071 = NBRC 12689
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6317050)
AUTHORS Nakano,K., Terabayashi,Y., Shiroma,A., Shimoji,M., Tamotsu,H.,
Ashimine,N., Ohki,S., Shinzato,M., Teruya,K., Satou,K. and
Hirano,T.
TITLE First Complete Genome Sequence of Pseudomonas aeruginosa (Schroeter
1872) Migula 1900 (DSM 50071T), Determined Using PacBio
Single-Molecule Real-Time Technology
JOURNAL Genome Announc 3 (4), e00932-15 (2015)
PUBMED 26294631
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6317050)
AUTHORS Nakano,K., Terabayashi,Y., Shiroma,A., Shimoji,M., Tamotsu,H.,
Ashimine,N., Ohki,S., Shinzato,M., Teruya,K., Satou,K. and
Hirano,T.
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2015) Research and Development Division, Okinawa
Institute of Advanced Sciences, Okinawa Biotechnology Business
Support Center, Suite109, 5-1, Suzaki, Uruma, Okinawa 904-2234,
Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: HGAP3 v. 2.3.0
Genome Coverage :: 843x
Sequencing Technology :: PacBio
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 07/02/2015 10:33:57
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline
Annotation Method :: Best-placed reference protein set;
GeneMarkS+
Annotation Software revision :: 2.10
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes :: 5,805
CDS :: 5,710
Pseudo Genes :: 18
CRISPR Arrays :: 3
rRNAs :: 12 (5S, 16S, 23S)
tRNAs :: 64
ncRNA :: 1
Frameshifted Genes :: 11
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa DSM 50071 = NBRC 12689"
/mol_type="genomic DNA"
/strain="DSM 50071"
/culture_collection="DSM:50071"
/type_material="type strain of Pseudomonas aeruginosa"
/db_xref="taxon:1123015"
protein /locus_tag="PA50071_22160"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003147216.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MPSRSPSSAR SSRALYAPRL KPLAQAIALL LVAGGAQAAG QPFSAAWFAA KGAAQGGAAG
61 APRPGAQLPG APPPLAQQQR VNQQLQRSMA NLNNTVAAIA AQQAAQAAGR QAALNLPQDV
121 PDGLGEGGLK VDASLPFEQA WQNAKGPVQT QAAGKTTVSI EQTADKAVLN WETFNVGRNT
181 TVDFQQHADW ALLNRVNDPS ARPSQIQGQI KADGTVMLVN RNGVVFSGSS QVDVRNLTVA
241 AANISDEQFR QRGLYYDNAG SRPTFTDAAG AVRVEQGAQL RTAAPSGSTR GGGYVLLLGS
301 EVDNAGSIVT PKGQTVLSAG DSFVIRRGQG TDGNLTSTTR GNEVLPGFAA DSSAGRVRNS
361 GLVQAATGDI SLSGREVEQA GVLLSSSSVD SRGTLHLKAS ERITLAEGAT SAILVDSSGS
421 AALDSQREAL LKPLNGSSAA VSRGDDDRRD LSRVEIDSAG SVDFRDGSIT LASGGQVAVN
481 AGQRALLRDG AVIDVSGAQG VQVAMETNNI KVNVRGNEQR DASVNREGGG LNSQDVWVDV
541 RDLVRVPAGT NGYASDRWYT AGGLLEVGGY LGTQGHSAGE WMAQGGIVSF TGNDVVTQAG
601 SQINLSGGTL DVQGGYIRQT WLKGSDGRLY ELGSAPGDLL YDGIYRGYEA HSERWDQTRY
661 FYNPLIAPTQ RYESGYSVGR DAGSLVIGSA NARLDGQVVG DTYRGERQTE APQAGLDGYN
721 QSQNAVARGA QLVVGRYTPY YVKSSGLLEY ALGADAGSLK QVVIGAGEVA AEEPTLDAPV
781 AAERQGRLSL DSELLNGFQL GGLKVAAGES IRVDSALTLA NGGEAILFAN DVAIDADITA
841 HGGSLQAGNV LAQISPNGTI DGFVDAGREA GILRVGDGVR LDASGLWSNL LLAPEDNDTL
901 AYRDGGRISL RSGGDLSLGQ GSLLDVSSGA ALLADGKRLG GRGGDIALHA SAGLAQASDG
961 QLQLGGTLNG LGTSGAGTLS LQSGKVRIGG GDLGDGSLQL AEDFFQQGFA SYRVVGRSGL
1021 RVAEDAQVRV ARPVYRFASG AGEVAAGEAP REALEAWIPP LYLEDALAGR LVQREGADLY
1081 LQAGGDGNIL GQLDPASQTL ELGRGSLVEV DPGRAIVLRG PGQITLDGIL NAWGGRIDVR
1141 QQQFGALDVT QDNQPKAQGQ PHARSIWIGE QALLDVAGRA VTALDGRGRR YGEVQSGGSI
1201 VIGGEIDPGK AIATSADAFV IVRPGARLEA SGSQAQLDVP GLGRVLLAGD GGRIALSSYN
1261 GLYLDGSLRA AAGGSGAAGG SLEIIADAPL YQGFTVVDDR VLAMRELILT AGHADSGLPT
1321 LLQPGMDDSA LRYGQSRVGT QSLTGGGFDQ LSLFSNGPLS FEGNIDLAMG RSLNLYAGTI
1381 AATGGGPSEV KLQAPYVRLS GIGMYGQQAS GEFRPRLTYG PTATAEQVRL QVSAGRLLDI
1441 AGRLSFGSDG VINGVNAEAV RYQRPGFEKV TLRSEGDLRF AGDYPENGDP SGRLITHGDL
1501 QLTAAQLYPV TGASSTLYAG YGLDEGGQAV FDAERHLAIE RSGESLPDTP LSVFGSLAFM
1561 ASNIEQGGVV RAPLGLIQFG SNLDRAPGTV RLLPGSLTSV SGAELVMPYG GTTDGINYLV
1621 NQVPIQLTGA GGALAAGTLV AGVGLYASEV DVQQGARLDL SGGGELAGAG FISGRGGSTD
1681 ARFHPLVQQD NDGFRLPELS SNPVYAIVPG HQAVSAPLGG EAGAIQPLVG QQVTIGDGVP
1741 GLAAGTYTLL PSTYALLPGA FRVEINGLAG QGAPMATQGL RNGSWATSGQ LSIAGTSIRD
1801 SLSRQVILSS ADTLRRYSQY NEMSYADFIR ADAARKNIPR AMLPVDARSL YLGLRADEEL
1861 RENALSFEGK VDFTPEESGY GGSLIVDAEA GIEILPEGGL PDSDFAGVSL VADDLNAIGA
1921 SRIAIGTLPY VEYGEQGNFV QFGGSNRLFP VVLRKGAHLS APEVIIGRDI TLEGGSGIST
1981 LGKGKTAYDS SDGFIYQPGG RNLLLLSNGW LNLLAPAADS SLPVRLGGCA EGAGCADTEL
2041 YSEGTLGIAT NGTVTFGDNV RYGTRNLSLA LSTINIGSSQ SLADAAARGV LPNGLALDQT
2101 VLQRLLRGER GAGIPALENL ILSARDAVNI YGSVSLDTYD PATGKSSLAN LVLGTPAIYG
2161 HGTGEDVASI RTASLVWSGS SQPAAAPVAG GAGSGSGTLR VDAERITLGY GANTQPAGET
2221 DEARLALGFA EVQLNASERI SANHKGSLRV YQRLDGYVAG EGLRYSGGDL RLSTPLLTGE
2281 AGSLSRISSG GSLSLAAPAG AAAVTFDSGT AGLGAELSLS AREIRLDSAV SLPSGKLSLS
2341 AEDDLELGDG ARIDLAGRKA SFNDVDKYSW GGDLLLSSRA GDIRQAAGSL IDLSARNNRG
2401 GTLSAVALAE DAGVVDLQGR ILGGASGDYD AGGTRVPFLG GELEIRAQRL GDGGSLSEQF
2461 TALNQRLNQG EVFGARRFQL KQGDLQIGDG LKAHRIEVSL DNGQLGVSGT VDASGAQVGE
2521 IRLAGGRGLS LGGNALLDAH GSLLRRDSYG QIIDSPNRAM VELSSGSGTL VLASGARIDL
2581 RHGTAAPAEQ VDGVARGTLE LNAPRLGGVS AGDIAIDASG ALDIRGAGSI ALNAVQRYDD
2641 APWGNDPAAG GRPYQVIDQA YLDARHAESS AFIAAALANR ELLDGKLAGL TNATYADAFH
2701 LRPGVEIVSA TADGDLVVQG DLDLSGYRYA SLNPNTPLTE VYGSGEVGAL VLRAGGDLNL
2761 YGSINDGFAP PPDSPDDKGW ILTPGVQPFG GDLVVPGPGV VLGDGTAFLG GRTLNYDLPI
2821 KGTTLAAGTR LATEAVLEQP YTLAAGSVLV ADIHDAAGNL LYAAGSLLRD GVTLEVGSRL
2881 GAGTLLAAPA SVQAMTWPAG VPLPSILREG PSRPNVLLLN GELALARGSL IPSQTEVVLA
2941 GDAPFIELRP SDGVRQGRNW ALAEMLPAGS QSWSMRLVAG ADLAAADNRL VRPDSSASLN
3001 LADTHYQAKI EQSSGGLVFT DQATDWGITP GTPVDESNEW ICGLGPYCAE PPRWTWAPGN
3061 YLGMPAGTAI GEGDLWWCSV DPSLCIENLG KTVVTPQNQL FSVLRTGTGD LDLASAGNLT
3121 QWSPYGVYTA GTQAADVATG FNQPRGLFNG SVLGAGGADY EVLSTSQYQA WYPEHGGNLD
3181 IAVGGDVVGD QWAEKLTSSD PIRPLPPSAA VGNWLWRQGS ADREGVPTAW WVNFGSYVRG
3241 AEGDAPYLVG FTGFGTLGGG NLSMRTGGDA GNIAPRGDGS IPSSGNLNPR SQGLVLAVAG
3301 TGRLTSDGAL QLGGGGDLNV RIGGEVNPSR EARATQTYSS SGFDGLYSGG TIHDLQGALI
3361 NLRGSASLYS GALGGIDPRY DTLLRDPAEV RSRDAFSPTL ASSTGGLTLV AGDTGMRLET
3421 RGDLVLGGVT DPGRVGVPNT VGFTAPDGSV YQGGGIAWFS LWTAHTSIDL FAAGGNLTPS
3481 TQLVEATNAI PMAGRNLSPS DGRFIYPSIV RAAAPEGSIY LGPSSGYMGG VSLNVSTTPY
3541 SLLLAPSLNG ELELLAGDSI YAGGYSVQRS GADPANLPSI WTPAFAGYSD AALLNPIAGN
3601 GSPDGNPAVI GGLPLFYFGP DSAASLARDL QPARFYALTG DIVGLNSGAQ IRFGEQAGNR
3661 AGQTWYEGAG PVWMRAGRDI VASGTPLGQR ISAPSQISTD ASFTGNLFVH DDPNDLSLAQ
3721 AGRDILYGNF NVAGPGTLEI SAGRNILMED RAAITSLGAV VPGDSRPGAD IVLQAGAAGA
3781 DYRAFLERYL DPANLAQGGT PLAEQPGKVV RTYESELAKW LNERFGFAGD AEQAQAFFAG
3841 LPAEQQRIFA RQVYFAELRA GGREYNEVGG VRQSSYLRGR NAIAALFPER DPAGNPISYE
3901 GDIVMYGGAG VHTDFGGDIQ LLSPGGRQVF GIEGEAPPST AGIVTQGQGN IQAYSRDSIL
3961 LGQSRIMTTF GGSILAWSAE GDINAGRGSQ TTVVYTPPRR IYDAWGNVSL SPQVPSTGAG
4021 IATLNPIPEV APGDIDLIAP LGTIDAGEAG IRVSGNVNVA ALQVVNAANI QTQGQSSGIP
4081 LVASVNTGAL TSASAAASSA TQAAEDVSRQ QQAAARQRMP SVITVQVLGF GNERLEPSRD
4141 GASRSPGYNP DSAVQVLGAG ALGEQARSQL TDEERGNLIL
//