LOCUS AGF91299.1 5923 aa PRT HTG 26-FEB-2013
DEFINITION Cyanophage P-SS1 hypothetical protein protein.
ACCESSION JF974306-4
PROTEIN_ID AGF91299.1
SOURCE Cyanophage P-SS1
ORGANISM Cyanophage P-SS1
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota;
Caudoviricetes; Kyanoviridae; Ronodorvirus; Ronodorvirus ssm4.
REFERENCE 1 (bases 1 to 178284)
AUTHORS Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C.,
Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K.,
Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z.,
Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A.,
Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C.,
Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S.,
Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q.,
Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S.,
Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W.,
Haas,B., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE The Genome Sequence of Cyanophage P-SS1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 178284)
AUTHORS Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C.,
Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K.,
Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z.,
Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A.,
Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C.,
Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S.,
Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q.,
Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S.,
Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W.,
Haas,B., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2010) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
COMMENT This genome was sequenced by the Broad Institute and co-owned with
CAMERA.
##Metadata-START##
Isolation method :: double dilution series
Template preparation method :: lysate
Phage/virus type :: DNA:ds Viral DNA
Phage/virus "hybrid" information :: Not available
Phage/virus taxonomy :: Siphoviridae
Phage/virus strain :: Not available
Morphology :: Siphovirus
Latitude :: 38.10 N
Longitude :: 73.09 W
Depth (m) :: 60.00
Salinity (psu) :: 36.50
Temperature (C) :: 22.40
Collection date :: 12-Dec-2001
Sample collection site :: slope
Habitat description :: open ocean
Other metadata available :: Binder cruise
Lab Host :: Prochlorococcus marinus str.
MIT 9313
##Metadata-END##
* NOTE: This is a 'working draft' sequence. It currently
* consists of 2 contigs. The true order of the pieces
* is not known and their order in this sequence record is
* arbitrary. Gaps between the contigs are represented as
* runs of N, but the exact sizes of the gaps are unknown.
* This record will be updated with the finished sequence
* as soon as it is available and the accession number will
* be preserved.
* 1 150061: contig of 150061 bp in length
* 150062 150161: gap of unknown length
* 150162 178284: contig of 28123 bp in length.
FEATURES Qualifiers
source /organism="Cyanophage P-SS1"
/mol_type="genomic DNA"
/strain="P-SS1"
/isolation_source="slope"
/db_xref="taxon:889957"
/lab_host="Prochlorococcus marinus str. MIT 9313"
/lat_lon="38.10 N 73.09 W"
/collection_date="12-Dec-2001"
protein /locus_tag="CPYG_00004"
/note="similar to gp7"
/transl_table=11
BEGIN
1 MTNINKVSSA IVAQTPEFIE SDYPLFNRFL EYYYQSQEKT GLGQNILNNF LGYLDIDRLD
61 VGILDGKTKL VEAIDATSDT IVVESIDQFI EKSGSILIGS EVIYYESTTS SPNIALSPGI
121 SYDQVKLKWV NLFSPINLFD GTTTQFNLVS QDNPIAPPSA QHLIVSVYGE VLTPGTDYTV
181 NGTTITYASA PRTKIPSDDA INTFITYLDG FVENQIVPLD NISNSFGEGK TQFRITRSGI
241 AYEPIVDEYV VAIYDKRLLI PKVDYFIDGA DFIFATAPTN GRFLSLHSIE APVPSFGSGA
301 EGFARVNDLG QLTSISTNVN GSNYRFEYPP KVSISTTVGS GGAAQALVNG IKTVTLLNGG
361 KGYSDTNPPV VQIESPTKTG SIQATLKATV ENGSVTAVEL LGSGSGYTFT PRITFRQPGG
421 ATVATPTISN GSISGGLTIT NAGFGYTTPP VVYVDEPTGN NPIRASFQTV LASDGTIASI
481 TTINAGQGYT SVPRVAIVDP VGAQVLQTVV DGDGRVIRID ILDGGSGYDE VPSVYIVDNR
541 VDGTGAYAGG TGATATAAIF NGAITDINVS AFGSGYSASN PPSVVIQAPT SAEASAEIGL
601 NEVTGFKVNQ SGKGYNKAQF TGCARAASGI VEYTEDGNAV FSNDTTAASA TVDTEVKCLD
661 ALFVKRLLDK YTQQFLPDVP ELDYKKIDVR TAIKTIKDFY SAKGTSFSIA YLFKLLYGET
721 VSISYPKDQI IKPSAATWSI DTILRATKVS GLATDIQDGL LQQDADIADP NVKGASALVE
781 NYISIKTSTV EIFELVLSEE TITGTFTVPY KTKLAEPLNQ TDSIITVDST IGWPERNGEF
841 VIGTGSGAEL VQYKEKSLNQ FIECTRSVNG IVEDWDSATE VSSNFQVKIN KDTPQEVVMN
901 VVGIVDAQQT TLTDTGSYYL QGDKLTVSKL GGTGTSPLLT TWLYNVKKLI TVSGITFGGV
961 NNQSATVTCS NNHGLLVGDQ VTVYGANPII YNGTFTVTSR DSETVFQYAL PQPAAIVPQG
1021 NILVSVDLNK GKSDTTTILN AIGPYTTNIQ NSFFNDNYTY VASTGIPNYS IGPFPGSALL
1081 PGNQRKLNRF PTLPTTISTK SEISSGPIGT WVNGVSVWSY KSTQSKTFGA ITNIAITNAG
1141 QGYDAASPPV ITISGGGGTG ATANVVVNGS ISEITVTAGG SGYTSSPLVS IVGGGGSGAA
1201 ATAIITKGAV SRILINSGGT GYTSQPSITI VGGGGTGAAG TASVRGPINT VNITNGGSSY
1261 TSAPTVSLSS GSGAVAQPIV QNGRIISIAI ISAGSGYTTA PEVSIQGVGF GAVARATIDT
1321 DGENAGRVTS ITIINRGIGY VQGTTLINMT SVGQDAVFTP SVFKWTYNLQ ATSVLDAAKG
1381 GVFEGYNNQY GGEYAHLSNP QKLRFILGDN LQEAVVGTIT EQETQLQHSP IIGWAFDGNP
1441 IYGPYGYTDP TDQSSEITRL RTSYRVKPAL VQTSNNPSPV RTAGPLLSVE AAGNFVEDYE
1501 YVFNLGDLDQ YNGRFCKTPD YPTGRYCYFV TIDATEAGNP EFPYVLGPSF NSVVDTWNLS
1561 TSAVQQNIPT GVVRYRDPYE NVDIDVERAP NASTNALTTE DGAILLFDPE DTNRDGQIDA
1621 EESAEVNLGQ LFEESPLQLF DYFPKVRFDS KVDIEVETTN KFEDANVTGF TIENSGQSYQ
1681 VNDRLVFDNT GTGGDGASAR VSRIKGETVS AYTFESISGN NFGVLTTSSP HNLVAGDSIF
1741 VDYTPVMDNT NKQFTVRQYK GIEEIQITQT GSGYNTDIPP TIIIDSTSGQ DGELEAIVTS
1801 VGSIDTVNII NSGSGYTSNP RVILSHPQIF KKADYYLSFI NNNNYVKVND TFVNDNKEVF
1861 ICGKTKDASG NVVAFVSKLS ATGVKEWSKT LELGSGLNYA EFNSLYVDGN DVWVVGINKP
1921 NSSILNAYNP DVILCKYTQA ANGLSATLAF QKAYAGISGG TRADHITIIK KYSDTRYIIG
1981 GYTNTNSANP DDAFIASIDT SGNFAIKRKF ASANKSERIT DIICNYNSAT GGQDVYFCME
2041 TASTVNALDV DVAVGKCQIG VNAITVDWIN TYANSLHSMI DTSIAIDEFN EIYINATCRQ
2101 KANDTDRDSI WVGKIDSTGA LIWNYRYLTP GRDVTSCGKS AIDLFGDLNI AYTRDNNTNE
2161 YKTVDVLKIG YNGTIKNHTT TEFTADNIEG LQIHGLDVDT SGDVHTFGQT YWNRNEFVIP
2221 FTSSALTDTT THYTAALTST SDSFSYDTSG GWGKILGATT AAPSVWTNTN IKFAGTDLGQ
2281 KLAGDWTLEF FIFKDATNSN VFSQPKETLF AIGDATVSTG GLHLYYDQSS AGPSGPLTLT
2341 ITNSTTSINS AGSSLTSSQT NLYADNTWQA IAVTKSGDTF KAYVNGIEVL TGTISGTSLG
2401 AKDLYFGNIP GANGTLGQFR SNEQGQYHID HLRLRNRAIT PTVPSDILAL PTAGAYGLTF
2461 NWVDDAWFAD HMSRYDYIEY AGFGLKSDKN ADAARLGNQG KKANTGITFT RTAVTPVIGS
2521 PLTINVNGYA LGEAGYQSLD FDDSTTTMTE DTETLSHVQD IWSSRTATVP SPGSQKLKVT
2581 AVVKDRYYFK VTPTVKIDNV QALTINQAFN FSVGSKLVLK NDSGQFVNSG YIIRKDDTNN
2641 IVYLAVNNNA WSNDLNTGQL STEQFNEQSN YGITGAIPND INEISNYTFA EINNQTPGTF
2701 IINLDGFDLD GTVADVPATI ALTAAGTGYP NTGDSVATTT TNGEASGLLV DYTASGGVIQ
2761 SISIDSGGAA GSGYKVGDEV VVSGGNGDAK FTINSTTGNL DSFATFKPYS DADYSVRIDQ
2821 VSGSSAYIVG SVVTIGSGAI TWNSDYSQAT ISGLTGVLKI TLVANLTKIL QATAVANSDE
2881 VYVITNTSHY LSKGDMVYVD GNPTQTIGAT SYDEYDGAFA VERVVSPLEF TYKLDQAALT
2941 APATSASAVS IFVKSPTLKM YYGHQYLFDL SHSSMAGGNL SFAKDNLYKL EYSFNSIERV
3001 GTPGVTGGGQ PTPTVKLKVD RNIVTNISYY FDPSRTGDDS PVVPGSYLDV VNSPYDGTFE
3061 ISSIAGATIT KGADILKFPL ANEPEAAATI SQASYTTSST KAVGSIGDIR IVNPGGFYTK
3121 LPIVSGITSS RQIERVQINA PGTEYAVGTY NGVPITGDGE GGFVSITVAD GTDAEGSTIP
3181 GQINNVVVTS PGKNYTTASI DINAIPGILG TGLTGSGAEL VVVIPSAGTG ASVFTKGANV
3241 GKIKKLKNNN FGYDYPHDYT LRPEISFPIN AQLTSTSILD SITITDPGTG YSQAPAVIVT
3301 GGGGSGAIAE ATIKNGRLDV IIVKDPGAGY SSTPTVSLRS SFNYVINLDL GLLQFAFPHG
3361 IANGAAVTLN VVDTGDGADF PLSAGAVGRL NGSTTYYAIS GTANSLEDDQ LKLAITAANA
3421 ELGDALSFSN AGTGRQQVLT ESFGGSAEAN VITSTFLEGE LVYQGDSLAT ATAQGFVSTN
3481 SGWQVGPRIL KIVDYTGDFA ENQRITGVIS KSSGIITDLK IARGVLEIGS ITRTTGQFID
3541 DVGKPSEIIQ KIQDSYYYQD FSYAVKSSTS ISEWKEILIK NVHPASFKVF GELNLNEYGF
3601 IPNKETFFSL TKSVELAQEA IVPNIQNFAL VEPVYTAFNN TEVLFRQKRL TSSENILTSV
3661 VQRIDDISNL FDGERTSFPL QVNQTNIVAN ANQLMIVLNG VVQTPGTAFS IQQDSIVFVE
3721 PPQPPASVKY VNVTINLIQT VDLTFTNISG IFPNIGNTVV GTSSNARLTV TKVTGNTITG
3781 FITQGTFILP TAGGGGELCT VSATGFSANI ATRTADININ NVTTGNFPAA ADVTAGTVFT
3841 GATSGAQLTI TQVVGTTISG TVTLGNFQTN EIITATLSGG AAFSGTTYTV TGGVASGGLF
3901 IFGEQVTNFD GDTAKVEQVN LQTGQEIPLA QLRYTVGLST TSIEVVAYRT DNTAADAAVP
3961 AGTFTAGKNY QFGSEIVLVS AVTQGSESTT LTVTRAQNGT TAVSHQEDVP VYGTDISVTD
4021 QLTLSKTAGT YQSTPGLFDI QLNDYIIAAQ SGVVAQVTAS SVYQDPTTNE FIGQVNISPG
4081 SSFFGLLFNR ITSQTYPNVV LDNIANSSVN IVDFTDNNTP FNENFPATEQ INNYVITYDN
4141 ASGALSEGED IRNYKIEYGN SNGDFDSAED AKIRKLTFTN QKGTGFFVAG QTIRIGSLAE
4201 GEGTKAEVVG YSQARKTVYL GKIGRCQYNG QDIHAITFAG NAQISTGSFK FGGSSLLLDG
4261 TGDYVNIAAS SEFAWGTGAF TLEFWVNPDS SAISGTATLL DQRENATEVA VRVYLQAAQI
4321 RYNVNGSDLV TSGATTLNNA TWYHVAIVRS GSTTKIWLNG VEVGTGTDSS NFATKPIRVG
4381 MDYNGANGFT GYIDELRVSN SNRYSSAFTS QTGIHQGDTN TKLLVHFDGS NGQTYTEDWS
4441 GFVSPAIGDE FNNDSILATS RTTGAPAGFV GRTHRYLNAA DHILTNKELI KAEALYIMKQ
4501 VFPAHTVKGG DSAQLARLEV LIQALVDDLR NGSNSHIWTT SASYINRTTN PISIATGTIE
4561 GDVPQEVYAT EIVEKISKFV INNVPWDIQD TSHSFTQVYD GTLKDSDYPS AVNFTPTGAT
4621 YNPATGDMVL TSNSHGLLSP REITASNATY TATTGVLGIT SNGHNLQTGD RIKLKPNSIT
4681 MTCTSDGNTV SQSYPRPDDP AGQGWMEVTR IDANNFSINV GKSPTVNYTV LDATYNGQTG
4741 FMTMDIGDND LRTAWKYTPE GAAYNPSTGV MTITIANHGF YVGDRVMFDV YSLVFTCAQD
4801 SNATDHPYPR LTDPYYNKWL AISNVTTNTF DVNVGTSSNT TTHTFQYALP NSMVRSGETL
4861 RLSKDAVSFK CSQDNFKTIH SYPRTDDPGY NTSLPIWTNG TPLTATNASY NAQTGDMVIT
4921 IPSHGLTTDN EIRIELNSLT FACTKDGNKT THSYPRATDP AAQRWLRIEE KTDDTVKVNV
4981 GIGAVADQYV HTFVSALEHS IIKRDNTITV NIGKSPTVAY IPTGQGSYNA TTGALVLTIG
5041 NHSLPAPTTH TVTNAVYVPS TGIMTLTIAG HNFSNGEKVK IADNSLRFTC AQDNNATNHD
5101 YPRSTDAVSN KWIPIFNVTT NTFDVQVLDN IPSTNVTAHT FVSATSGGVS KANSTIKLAP
5161 NSLVFTCTQD SNATEHLYPR SEQDRHTATT GTSYNPVTGI MTVTTAAAHG FRVGTPIMFQ
5221 DLSLTFTCNE DNNATNHPYP RSTDYASNRW LFVETIPTTT TFTVQVLDKI PSTNTTTHTF
5281 VSATKGGIIE GDPAVAEAIP IDAVTSNSVT INVLNGYTPS NTTTHTLSGV VSHQYTPNGA
5341 TYDATTGVME LTFATTNFTP TNATYNPTTG DMVLTIGSHT LKIGDTVRIQ PNSITFTCTL
5401 DGNTAQKTYP RASSNDYAYN YDLTVTDETA TTITVNVNGD GTPISDLSAH TFVSASTNAV
5461 QHGHQIKEYE RIKLADGAVT FSCSMDGNSS NKAYPRATDP ISGKWMEVFN VDYNKLSINV
5521 GKSPLRKFTP THADYNPTTG FMTLTIGRHN LRRGTAVKIA TNSITFRCAQ DDYATDHSYP
5581 RTTDPNYNTA VTITDVTDDT ITVQTLASTP STNTSNHIFV SATADAITTG GNYSHTFVSA
5641 SSNGVQRALV QTGGNYTHKF ASGLANGVST GGNYTHTFVS ATSNGIDVAG DSVIISDNSL
5701 TFTCTKDGNA TTHTYPRSTD PASAQVLPLT AHDANTFTIN VGASKADDQY THTWTASATN
5761 AVTKVFYSLS DCSDVITTQN NLVTILTDTL NNAILASPTD HLATVTSVSP AAEFIGGRVN
5821 GFKEVPFPVS YHDGTSDIIY TNQIDIDGQY RYRDAAYLIR QNASVIVDKA TYDMLQRYPD
5881 LVLDLPGNNN GLSDAGTLQK KTDLTTIVQA IADDLEDGGN AKL
//