LOCUS AGF91299.1 5923 aa PRT HTG 26-FEB-2013 DEFINITION Cyanophage P-SS1 hypothetical protein protein. ACCESSION JF974306-4 PROTEIN_ID AGF91299.1 SOURCE Cyanophage P-SS1 ORGANISM Cyanophage P-SS1 Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Kyanoviridae; Ronodorvirus; Ronodorvirus ssm4. REFERENCE 1 (bases 1 to 178284) AUTHORS Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform TITLE The Genome Sequence of Cyanophage P-SS1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 178284) AUTHORS Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform TITLE Direct Submission JOURNAL Submitted (07-DEC-2010) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT This genome was sequenced by the Broad Institute and co-owned with CAMERA. ##Metadata-START## Isolation method :: double dilution series Template preparation method :: lysate Phage/virus type :: DNA:ds Viral DNA Phage/virus "hybrid" information :: Not available Phage/virus taxonomy :: Siphoviridae Phage/virus strain :: Not available Morphology :: Siphovirus Latitude :: 38.10 N Longitude :: 73.09 W Depth (m) :: 60.00 Salinity (psu) :: 36.50 Temperature (C) :: 22.40 Collection date :: 12-Dec-2001 Sample collection site :: slope Habitat description :: open ocean Other metadata available :: Binder cruise Lab Host :: Prochlorococcus marinus str. MIT 9313 ##Metadata-END## * NOTE: This is a 'working draft' sequence. It currently * consists of 2 contigs. The true order of the pieces * is not known and their order in this sequence record is * arbitrary. Gaps between the contigs are represented as * runs of N, but the exact sizes of the gaps are unknown. * This record will be updated with the finished sequence * as soon as it is available and the accession number will * be preserved. * 1 150061: contig of 150061 bp in length * 150062 150161: gap of unknown length * 150162 178284: contig of 28123 bp in length. FEATURES Qualifiers source /organism="Cyanophage P-SS1" /mol_type="genomic DNA" /strain="P-SS1" /isolation_source="slope" /db_xref="taxon:889957" /lab_host="Prochlorococcus marinus str. MIT 9313" /lat_lon="38.10 N 73.09 W" /collection_date="12-Dec-2001" protein /locus_tag="CPYG_00004" /note="similar to gp7" /transl_table=11 BEGIN 1 MTNINKVSSA IVAQTPEFIE SDYPLFNRFL EYYYQSQEKT GLGQNILNNF LGYLDIDRLD 61 VGILDGKTKL VEAIDATSDT IVVESIDQFI EKSGSILIGS EVIYYESTTS SPNIALSPGI 121 SYDQVKLKWV NLFSPINLFD GTTTQFNLVS QDNPIAPPSA QHLIVSVYGE VLTPGTDYTV 181 NGTTITYASA PRTKIPSDDA INTFITYLDG FVENQIVPLD NISNSFGEGK TQFRITRSGI 241 AYEPIVDEYV VAIYDKRLLI PKVDYFIDGA DFIFATAPTN GRFLSLHSIE APVPSFGSGA 301 EGFARVNDLG QLTSISTNVN GSNYRFEYPP KVSISTTVGS GGAAQALVNG IKTVTLLNGG 361 KGYSDTNPPV VQIESPTKTG SIQATLKATV ENGSVTAVEL LGSGSGYTFT PRITFRQPGG 421 ATVATPTISN GSISGGLTIT NAGFGYTTPP VVYVDEPTGN NPIRASFQTV LASDGTIASI 481 TTINAGQGYT SVPRVAIVDP VGAQVLQTVV DGDGRVIRID ILDGGSGYDE VPSVYIVDNR 541 VDGTGAYAGG TGATATAAIF NGAITDINVS AFGSGYSASN PPSVVIQAPT SAEASAEIGL 601 NEVTGFKVNQ SGKGYNKAQF TGCARAASGI VEYTEDGNAV FSNDTTAASA TVDTEVKCLD 661 ALFVKRLLDK YTQQFLPDVP ELDYKKIDVR TAIKTIKDFY SAKGTSFSIA YLFKLLYGET 721 VSISYPKDQI IKPSAATWSI DTILRATKVS GLATDIQDGL LQQDADIADP NVKGASALVE 781 NYISIKTSTV EIFELVLSEE TITGTFTVPY KTKLAEPLNQ TDSIITVDST IGWPERNGEF 841 VIGTGSGAEL VQYKEKSLNQ FIECTRSVNG IVEDWDSATE VSSNFQVKIN KDTPQEVVMN 901 VVGIVDAQQT TLTDTGSYYL QGDKLTVSKL GGTGTSPLLT TWLYNVKKLI TVSGITFGGV 961 NNQSATVTCS NNHGLLVGDQ VTVYGANPII YNGTFTVTSR DSETVFQYAL PQPAAIVPQG 1021 NILVSVDLNK GKSDTTTILN AIGPYTTNIQ NSFFNDNYTY VASTGIPNYS IGPFPGSALL 1081 PGNQRKLNRF PTLPTTISTK SEISSGPIGT WVNGVSVWSY KSTQSKTFGA ITNIAITNAG 1141 QGYDAASPPV ITISGGGGTG ATANVVVNGS ISEITVTAGG SGYTSSPLVS IVGGGGSGAA 1201 ATAIITKGAV SRILINSGGT GYTSQPSITI VGGGGTGAAG TASVRGPINT VNITNGGSSY 1261 TSAPTVSLSS GSGAVAQPIV QNGRIISIAI ISAGSGYTTA PEVSIQGVGF GAVARATIDT 1321 DGENAGRVTS ITIINRGIGY VQGTTLINMT SVGQDAVFTP SVFKWTYNLQ ATSVLDAAKG 1381 GVFEGYNNQY GGEYAHLSNP QKLRFILGDN LQEAVVGTIT EQETQLQHSP IIGWAFDGNP 1441 IYGPYGYTDP TDQSSEITRL RTSYRVKPAL VQTSNNPSPV RTAGPLLSVE AAGNFVEDYE 1501 YVFNLGDLDQ YNGRFCKTPD YPTGRYCYFV TIDATEAGNP EFPYVLGPSF NSVVDTWNLS 1561 TSAVQQNIPT GVVRYRDPYE NVDIDVERAP NASTNALTTE DGAILLFDPE DTNRDGQIDA 1621 EESAEVNLGQ LFEESPLQLF DYFPKVRFDS KVDIEVETTN KFEDANVTGF TIENSGQSYQ 1681 VNDRLVFDNT GTGGDGASAR VSRIKGETVS AYTFESISGN NFGVLTTSSP HNLVAGDSIF 1741 VDYTPVMDNT NKQFTVRQYK GIEEIQITQT GSGYNTDIPP TIIIDSTSGQ DGELEAIVTS 1801 VGSIDTVNII NSGSGYTSNP RVILSHPQIF KKADYYLSFI NNNNYVKVND TFVNDNKEVF 1861 ICGKTKDASG NVVAFVSKLS ATGVKEWSKT LELGSGLNYA EFNSLYVDGN DVWVVGINKP 1921 NSSILNAYNP DVILCKYTQA ANGLSATLAF QKAYAGISGG TRADHITIIK KYSDTRYIIG 1981 GYTNTNSANP DDAFIASIDT SGNFAIKRKF ASANKSERIT DIICNYNSAT GGQDVYFCME 2041 TASTVNALDV DVAVGKCQIG VNAITVDWIN TYANSLHSMI DTSIAIDEFN EIYINATCRQ 2101 KANDTDRDSI WVGKIDSTGA LIWNYRYLTP GRDVTSCGKS AIDLFGDLNI AYTRDNNTNE 2161 YKTVDVLKIG YNGTIKNHTT TEFTADNIEG LQIHGLDVDT SGDVHTFGQT YWNRNEFVIP 2221 FTSSALTDTT THYTAALTST SDSFSYDTSG GWGKILGATT AAPSVWTNTN IKFAGTDLGQ 2281 KLAGDWTLEF FIFKDATNSN VFSQPKETLF AIGDATVSTG GLHLYYDQSS AGPSGPLTLT 2341 ITNSTTSINS AGSSLTSSQT NLYADNTWQA IAVTKSGDTF KAYVNGIEVL TGTISGTSLG 2401 AKDLYFGNIP GANGTLGQFR SNEQGQYHID HLRLRNRAIT PTVPSDILAL PTAGAYGLTF 2461 NWVDDAWFAD HMSRYDYIEY AGFGLKSDKN ADAARLGNQG KKANTGITFT RTAVTPVIGS 2521 PLTINVNGYA LGEAGYQSLD FDDSTTTMTE DTETLSHVQD IWSSRTATVP SPGSQKLKVT 2581 AVVKDRYYFK VTPTVKIDNV QALTINQAFN FSVGSKLVLK NDSGQFVNSG YIIRKDDTNN 2641 IVYLAVNNNA WSNDLNTGQL STEQFNEQSN YGITGAIPND INEISNYTFA EINNQTPGTF 2701 IINLDGFDLD GTVADVPATI ALTAAGTGYP NTGDSVATTT TNGEASGLLV DYTASGGVIQ 2761 SISIDSGGAA GSGYKVGDEV VVSGGNGDAK FTINSTTGNL DSFATFKPYS DADYSVRIDQ 2821 VSGSSAYIVG SVVTIGSGAI TWNSDYSQAT ISGLTGVLKI TLVANLTKIL QATAVANSDE 2881 VYVITNTSHY LSKGDMVYVD GNPTQTIGAT SYDEYDGAFA VERVVSPLEF TYKLDQAALT 2941 APATSASAVS IFVKSPTLKM YYGHQYLFDL SHSSMAGGNL SFAKDNLYKL EYSFNSIERV 3001 GTPGVTGGGQ PTPTVKLKVD RNIVTNISYY FDPSRTGDDS PVVPGSYLDV VNSPYDGTFE 3061 ISSIAGATIT KGADILKFPL ANEPEAAATI SQASYTTSST KAVGSIGDIR IVNPGGFYTK 3121 LPIVSGITSS RQIERVQINA PGTEYAVGTY NGVPITGDGE GGFVSITVAD GTDAEGSTIP 3181 GQINNVVVTS PGKNYTTASI DINAIPGILG TGLTGSGAEL VVVIPSAGTG ASVFTKGANV 3241 GKIKKLKNNN FGYDYPHDYT LRPEISFPIN AQLTSTSILD SITITDPGTG YSQAPAVIVT 3301 GGGGSGAIAE ATIKNGRLDV IIVKDPGAGY SSTPTVSLRS SFNYVINLDL GLLQFAFPHG 3361 IANGAAVTLN VVDTGDGADF PLSAGAVGRL NGSTTYYAIS GTANSLEDDQ LKLAITAANA 3421 ELGDALSFSN AGTGRQQVLT ESFGGSAEAN VITSTFLEGE LVYQGDSLAT ATAQGFVSTN 3481 SGWQVGPRIL KIVDYTGDFA ENQRITGVIS KSSGIITDLK IARGVLEIGS ITRTTGQFID 3541 DVGKPSEIIQ KIQDSYYYQD FSYAVKSSTS ISEWKEILIK NVHPASFKVF GELNLNEYGF 3601 IPNKETFFSL TKSVELAQEA IVPNIQNFAL VEPVYTAFNN TEVLFRQKRL TSSENILTSV 3661 VQRIDDISNL FDGERTSFPL QVNQTNIVAN ANQLMIVLNG VVQTPGTAFS IQQDSIVFVE 3721 PPQPPASVKY VNVTINLIQT VDLTFTNISG IFPNIGNTVV GTSSNARLTV TKVTGNTITG 3781 FITQGTFILP TAGGGGELCT VSATGFSANI ATRTADININ NVTTGNFPAA ADVTAGTVFT 3841 GATSGAQLTI TQVVGTTISG TVTLGNFQTN EIITATLSGG AAFSGTTYTV TGGVASGGLF 3901 IFGEQVTNFD GDTAKVEQVN LQTGQEIPLA QLRYTVGLST TSIEVVAYRT DNTAADAAVP 3961 AGTFTAGKNY QFGSEIVLVS AVTQGSESTT LTVTRAQNGT TAVSHQEDVP VYGTDISVTD 4021 QLTLSKTAGT YQSTPGLFDI QLNDYIIAAQ SGVVAQVTAS SVYQDPTTNE FIGQVNISPG 4081 SSFFGLLFNR ITSQTYPNVV LDNIANSSVN IVDFTDNNTP FNENFPATEQ INNYVITYDN 4141 ASGALSEGED IRNYKIEYGN SNGDFDSAED AKIRKLTFTN QKGTGFFVAG QTIRIGSLAE 4201 GEGTKAEVVG YSQARKTVYL GKIGRCQYNG QDIHAITFAG NAQISTGSFK FGGSSLLLDG 4261 TGDYVNIAAS SEFAWGTGAF TLEFWVNPDS SAISGTATLL DQRENATEVA VRVYLQAAQI 4321 RYNVNGSDLV TSGATTLNNA TWYHVAIVRS GSTTKIWLNG VEVGTGTDSS NFATKPIRVG 4381 MDYNGANGFT GYIDELRVSN SNRYSSAFTS QTGIHQGDTN TKLLVHFDGS NGQTYTEDWS 4441 GFVSPAIGDE FNNDSILATS RTTGAPAGFV GRTHRYLNAA DHILTNKELI KAEALYIMKQ 4501 VFPAHTVKGG DSAQLARLEV LIQALVDDLR NGSNSHIWTT SASYINRTTN PISIATGTIE 4561 GDVPQEVYAT EIVEKISKFV INNVPWDIQD TSHSFTQVYD GTLKDSDYPS AVNFTPTGAT 4621 YNPATGDMVL TSNSHGLLSP REITASNATY TATTGVLGIT SNGHNLQTGD RIKLKPNSIT 4681 MTCTSDGNTV SQSYPRPDDP AGQGWMEVTR IDANNFSINV GKSPTVNYTV LDATYNGQTG 4741 FMTMDIGDND LRTAWKYTPE GAAYNPSTGV MTITIANHGF YVGDRVMFDV YSLVFTCAQD 4801 SNATDHPYPR LTDPYYNKWL AISNVTTNTF DVNVGTSSNT TTHTFQYALP NSMVRSGETL 4861 RLSKDAVSFK CSQDNFKTIH SYPRTDDPGY NTSLPIWTNG TPLTATNASY NAQTGDMVIT 4921 IPSHGLTTDN EIRIELNSLT FACTKDGNKT THSYPRATDP AAQRWLRIEE KTDDTVKVNV 4981 GIGAVADQYV HTFVSALEHS IIKRDNTITV NIGKSPTVAY IPTGQGSYNA TTGALVLTIG 5041 NHSLPAPTTH TVTNAVYVPS TGIMTLTIAG HNFSNGEKVK IADNSLRFTC AQDNNATNHD 5101 YPRSTDAVSN KWIPIFNVTT NTFDVQVLDN IPSTNVTAHT FVSATSGGVS KANSTIKLAP 5161 NSLVFTCTQD SNATEHLYPR SEQDRHTATT GTSYNPVTGI MTVTTAAAHG FRVGTPIMFQ 5221 DLSLTFTCNE DNNATNHPYP RSTDYASNRW LFVETIPTTT TFTVQVLDKI PSTNTTTHTF 5281 VSATKGGIIE GDPAVAEAIP IDAVTSNSVT INVLNGYTPS NTTTHTLSGV VSHQYTPNGA 5341 TYDATTGVME LTFATTNFTP TNATYNPTTG DMVLTIGSHT LKIGDTVRIQ PNSITFTCTL 5401 DGNTAQKTYP RASSNDYAYN YDLTVTDETA TTITVNVNGD GTPISDLSAH TFVSASTNAV 5461 QHGHQIKEYE RIKLADGAVT FSCSMDGNSS NKAYPRATDP ISGKWMEVFN VDYNKLSINV 5521 GKSPLRKFTP THADYNPTTG FMTLTIGRHN LRRGTAVKIA TNSITFRCAQ DDYATDHSYP 5581 RTTDPNYNTA VTITDVTDDT ITVQTLASTP STNTSNHIFV SATADAITTG GNYSHTFVSA 5641 SSNGVQRALV QTGGNYTHKF ASGLANGVST GGNYTHTFVS ATSNGIDVAG DSVIISDNSL 5701 TFTCTKDGNA TTHTYPRSTD PASAQVLPLT AHDANTFTIN VGASKADDQY THTWTASATN 5761 AVTKVFYSLS DCSDVITTQN NLVTILTDTL NNAILASPTD HLATVTSVSP AAEFIGGRVN 5821 GFKEVPFPVS YHDGTSDIIY TNQIDIDGQY RYRDAAYLIR QNASVIVDKA TYDMLQRYPD 5881 LVLDLPGNNN GLSDAGTLQK KTDLTTIVQA IADDLEDGGN AKL //