LOCUS AFM05265.1 1046 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 protein translocase subunit
secF protein.
ACCESSION CP003345-2753
PROTEIN_ID AFM05265.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_2916"
/note="PFAM: Protein export membrane protein; SecD/SecF GG
Motif; TIGRFAM: protein-export membrane protein SecD;
protein-export membrane protein, SecD/SecF family;
protein-export membrane protein SecF; protein translocase
subunit secD"
/transl_table=11
/db_xref="InterPro:IPR005665"
/db_xref="InterPro:IPR022646"
/db_xref="InterPro:IPR022813"
BEGIN
1 MQNRGFIIFL AILFAVLCLF SLSFTLVSRN VEGNAEAYSN GDAALKKQYL DSMWSQPVYD
61 ILIANFTYKE VKEKELNLGL DLQGGMHVTL EVSPIDILKS LSNESQNEHF QAALAEANKQ
121 QASSQDRYVE LFFDAYKTKA GEGKLKDIFA TSANSGKINF RSSDKEVEDF IRTEVDGSVQ
181 RAFEIIRTRV DKFGVTQPNV QLIEGTSRIQ VELPGVSNVE RVRDLLQGVA KLEFWEVYQP
241 QEYQDVLTQI NTFWVENRME KTETAPTNDL TTPDTTNTTA DAGNDLIMDT NDTQTDSLDN
301 VIANEEDTTK TNDLLADADT TQNQTVSPLF SKLTPLSQTY FTLTYEALDT SSINKILNDP
361 MVKSIIPKDM KFFWGVKPDA EDNGKAFYTL HVIKTATGGK SPMTGEVVTD ARQDINPNGQ
421 VEISLAMNGE GARLWRDLTG KNVGRQIAIV LDDYVYSAPN VNEEIGGGRS SISGSFTVEE
481 AKDLANILKA GKLPAPTRIV EEAVVGPSLG AAAQDQGIYS ILVGLLLVVI FMIVYYAKAG
541 IVANIALLAN IFFIFGLLSQ LGAALTLPGI AGIVLTIGMS VDANVLIFER IREELAMGKS
601 LMIAIEDGFQ RALITIIDAN VTTLITSVVL YVLGAGPIKG FAVTLIIGII CSFFTAVYIS
661 RLIIYWMSRK GDESNMSFST PFTKNMLANT NFNFLGKRKI GYALSGVLIA VGIGVLATKG
721 LNMGVDFTGG RSYVVEFSAD VIPSEIEANI GKELQTSLEV KSYDGDNKVK ITTSYRSEEE
781 STDADVAIQN EIMASLGDKY IALNPEVVST SKVGATIADD IADSALTAIG VALILMFGYI
841 SVRFSNWRFG VGAVAALTHD SLIVLSLFAI AYLLGFAVEI DQVFVAAILT VIGYSLNDTV
901 VVFDRIREAL NERVDENLQE TINGAVNQTL SRTLITSVTT LLVVLILFIF GGEALKGFSF
961 ALLIGVVVGT YSSVFVATPL VLDLYSKNAI EHERELLEKR KEKYAQQYSD KAEMAEYMKA
1021 MEEEAENPQV QQEAQPLVRP KKPKKY
//