LOCUS AFM05265.1 1046 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 protein translocase subunit secF protein. ACCESSION CP003345-2753 PROTEIN_ID AFM05265.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_2916" /note="PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; protein translocase subunit secD" /transl_table=11 /db_xref="InterPro:IPR005665" /db_xref="InterPro:IPR022646" /db_xref="InterPro:IPR022813" BEGIN 1 MQNRGFIIFL AILFAVLCLF SLSFTLVSRN VEGNAEAYSN GDAALKKQYL DSMWSQPVYD 61 ILIANFTYKE VKEKELNLGL DLQGGMHVTL EVSPIDILKS LSNESQNEHF QAALAEANKQ 121 QASSQDRYVE LFFDAYKTKA GEGKLKDIFA TSANSGKINF RSSDKEVEDF IRTEVDGSVQ 181 RAFEIIRTRV DKFGVTQPNV QLIEGTSRIQ VELPGVSNVE RVRDLLQGVA KLEFWEVYQP 241 QEYQDVLTQI NTFWVENRME KTETAPTNDL TTPDTTNTTA DAGNDLIMDT NDTQTDSLDN 301 VIANEEDTTK TNDLLADADT TQNQTVSPLF SKLTPLSQTY FTLTYEALDT SSINKILNDP 361 MVKSIIPKDM KFFWGVKPDA EDNGKAFYTL HVIKTATGGK SPMTGEVVTD ARQDINPNGQ 421 VEISLAMNGE GARLWRDLTG KNVGRQIAIV LDDYVYSAPN VNEEIGGGRS SISGSFTVEE 481 AKDLANILKA GKLPAPTRIV EEAVVGPSLG AAAQDQGIYS ILVGLLLVVI FMIVYYAKAG 541 IVANIALLAN IFFIFGLLSQ LGAALTLPGI AGIVLTIGMS VDANVLIFER IREELAMGKS 601 LMIAIEDGFQ RALITIIDAN VTTLITSVVL YVLGAGPIKG FAVTLIIGII CSFFTAVYIS 661 RLIIYWMSRK GDESNMSFST PFTKNMLANT NFNFLGKRKI GYALSGVLIA VGIGVLATKG 721 LNMGVDFTGG RSYVVEFSAD VIPSEIEANI GKELQTSLEV KSYDGDNKVK ITTSYRSEEE 781 STDADVAIQN EIMASLGDKY IALNPEVVST SKVGATIADD IADSALTAIG VALILMFGYI 841 SVRFSNWRFG VGAVAALTHD SLIVLSLFAI AYLLGFAVEI DQVFVAAILT VIGYSLNDTV 901 VVFDRIREAL NERVDENLQE TINGAVNQTL SRTLITSVTT LLVVLILFIF GGEALKGFSF 961 ALLIGVVVGT YSSVFVATPL VLDLYSKNAI EHERELLEKR KEKYAQQYSD KAEMAEYMKA 1021 MEEEAENPQV QQEAQPLVRP KKPKKY //