LOCUS AFM03791.1 1705 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 PAS domain S-box protein.
ACCESSION CP003345-1279
PROTEIN_ID AFM03791.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_1359"
/note="PFAM: Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase; His Kinase A (phosphoacceptor) domain;
PAS fold; TIGRFAM: PAS domain S-box"
/transl_table=11
/db_xref="InterPro:IPR000014"
/db_xref="InterPro:IPR000700"
/db_xref="InterPro:IPR003594"
/db_xref="InterPro:IPR003661"
/db_xref="InterPro:IPR004358"
/db_xref="InterPro:IPR005467"
/db_xref="InterPro:IPR013655"
BEGIN
1 MKKNINPESK KTVAHVLELN TYLINVQERA DKISDKFVIM FLILGACFAP IYETWSFTII
61 TSTVTVILYS IARFVLNNKF YARMIISLVY GIFMLQFIGQ MHGMAEMHFF FFINVALLII
121 YQDWRIMIPY VVLAILHHGI LGVLQANPDI FHLENLHLPN YFIGYNSITY DGEAVERITA
181 FQLFFHFGLI SIMACVAGWW AVIFRNNSIQ LLEKQLEQQA QNEELQASEE ELRQNTEELQ
241 STNNQMKVIQ KEIEEKQKLL NRAEKLVGMA SYEIDLATQN VTASDNLNLI YGEDVLDNMQ
301 KIMQIAHPED VHKVVGTLTK AAEGKIQVYD FVYRSKGENF SEYKYYRAVG ELAKDEMGNP
361 QKLVGTSQDI TAEIKQKQQV EEAYQELQSS EEELRQNTEE LQTTNEQLQT VQKEIEEKQH
421 LLNRAEKMVD MASYEIDLVT QKITHSENLT FISGGKDLSS MQKMMEMIHP EDSHIVTETF
481 YKIGKGEIEM YDISYRAKRE DSVEYKYYRS VGELVRDEMN NPTKIMGTTR DITNEIKQKH
541 QVEEAYQKIQ ASEEELRQNY EELQTTQEEL NLQKGRLEQI FDGVPAMIYQ FKMTKDRQLS
601 FPVVSKGSER VYGLSPEVIK NDANSILSTI YEEDLEVFQA SLLESAQNMT EWQADLRVVV
661 DGKVQWIRGN SKPVKDDDGD IIWSGITQEI TAQKQLEQDI QAKNEELQSS EEELRQNTEE
721 LQSTNDQLQV IQKEIEEKQN LLNKAEKLVG LASYEVNLTT QGLIHSDNLP FISGEERLDS
781 VQKVIEIAHP EDVHKVVEIL TLAAKGEIQN YDISYRAKGE KFAEYKYYRT IGEVVNDEQN
841 QPEKIVGTIQ DITAEIKQKQ QVEEAYQKVQ SSEEELRQNY EELQTTQEQL EESNQLINAQ
901 LEAISTSFGY VEFELNKKVI KTNSTFAEWT EFSESEIIGL SHRQLLPQDE ETENYFKKLW
961 KQLKEGKSVN GVFRRKTKSN KDLWIYGAYC PVKNAKGEVI KVIKIASNYN IQKQLEQDIQ
1021 AKNEELQSSE EELRQNTEEL QSTNDQLQVI QKEIEEKQNL LNKAEKLVGL ASYEVDLATQ
1081 KLTHSDNLPF ISGEERLDSV QKVIEIAHPE DVHKVVETLT LAAKGEIQNY DISYRAKGEK
1141 FAEYKYYRTI GEVVNDEQNQ PEKIVGTIQD ITAEIKQKQQ VEEAYQKVQS SEEELRQNYE
1201 ELQATQESLV ATQVEQEKFV SLIKHFDAFV AITDMEGKIQ FLNERGKELS GFGEDYKGRL
1261 VSEFHTREYA KVAQEVIIPT VLKKGKWQGE HQLQNQETKK AFETLATVFI IKDPHTKESI
1321 ALATVQIDIT EQKKIEKSIQ EQNKKLQASE EELQQNYEEL QATQEKLQQQ KEEIEKSFLE
1381 LQTTQSQLIQ SEKMASLGQL VANIAHEINT PLGAIRSSAM SIEEILEETL PTLPTFLRDL
1441 DDDFLQVFNG FVKQSSQKVD TLSSREKRVI KYDLIDELEA INIEQAEEYA DWIVDMNMYK
1501 EHDLFIPLLK TNNAKDILHV AYQLSTIIRS NRTVKTATDR AAKIVFALKN FARQDQTGEK
1561 AMVNINDSIE TTLTLYHNQI KQGIDVTRNL GEIPEFMGYP DELIQVWTNI IHNAIQAMNN
1621 NGQLFIQTSL ENNNVLISIQ DNGSGIPKKV QDRVFDAFFT TKVAGEGSGL GLDITKKIID
1681 KHNGKIWFET EEEVGTTFFI QIPLN
//