LOCUS AFM03791.1 1705 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 PAS domain S-box protein. ACCESSION CP003345-1279 PROTEIN_ID AFM03791.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_1359" /note="PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box" /transl_table=11 /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000700" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR003661" /db_xref="InterPro:IPR004358" /db_xref="InterPro:IPR005467" /db_xref="InterPro:IPR013655" BEGIN 1 MKKNINPESK KTVAHVLELN TYLINVQERA DKISDKFVIM FLILGACFAP IYETWSFTII 61 TSTVTVILYS IARFVLNNKF YARMIISLVY GIFMLQFIGQ MHGMAEMHFF FFINVALLII 121 YQDWRIMIPY VVLAILHHGI LGVLQANPDI FHLENLHLPN YFIGYNSITY DGEAVERITA 181 FQLFFHFGLI SIMACVAGWW AVIFRNNSIQ LLEKQLEQQA QNEELQASEE ELRQNTEELQ 241 STNNQMKVIQ KEIEEKQKLL NRAEKLVGMA SYEIDLATQN VTASDNLNLI YGEDVLDNMQ 301 KIMQIAHPED VHKVVGTLTK AAEGKIQVYD FVYRSKGENF SEYKYYRAVG ELAKDEMGNP 361 QKLVGTSQDI TAEIKQKQQV EEAYQELQSS EEELRQNTEE LQTTNEQLQT VQKEIEEKQH 421 LLNRAEKMVD MASYEIDLVT QKITHSENLT FISGGKDLSS MQKMMEMIHP EDSHIVTETF 481 YKIGKGEIEM YDISYRAKRE DSVEYKYYRS VGELVRDEMN NPTKIMGTTR DITNEIKQKH 541 QVEEAYQKIQ ASEEELRQNY EELQTTQEEL NLQKGRLEQI FDGVPAMIYQ FKMTKDRQLS 601 FPVVSKGSER VYGLSPEVIK NDANSILSTI YEEDLEVFQA SLLESAQNMT EWQADLRVVV 661 DGKVQWIRGN SKPVKDDDGD IIWSGITQEI TAQKQLEQDI QAKNEELQSS EEELRQNTEE 721 LQSTNDQLQV IQKEIEEKQN LLNKAEKLVG LASYEVNLTT QGLIHSDNLP FISGEERLDS 781 VQKVIEIAHP EDVHKVVEIL TLAAKGEIQN YDISYRAKGE KFAEYKYYRT IGEVVNDEQN 841 QPEKIVGTIQ DITAEIKQKQ QVEEAYQKVQ SSEEELRQNY EELQTTQEQL EESNQLINAQ 901 LEAISTSFGY VEFELNKKVI KTNSTFAEWT EFSESEIIGL SHRQLLPQDE ETENYFKKLW 961 KQLKEGKSVN GVFRRKTKSN KDLWIYGAYC PVKNAKGEVI KVIKIASNYN IQKQLEQDIQ 1021 AKNEELQSSE EELRQNTEEL QSTNDQLQVI QKEIEEKQNL LNKAEKLVGL ASYEVDLATQ 1081 KLTHSDNLPF ISGEERLDSV QKVIEIAHPE DVHKVVETLT LAAKGEIQNY DISYRAKGEK 1141 FAEYKYYRTI GEVVNDEQNQ PEKIVGTIQD ITAEIKQKQQ VEEAYQKVQS SEEELRQNYE 1201 ELQATQESLV ATQVEQEKFV SLIKHFDAFV AITDMEGKIQ FLNERGKELS GFGEDYKGRL 1261 VSEFHTREYA KVAQEVIIPT VLKKGKWQGE HQLQNQETKK AFETLATVFI IKDPHTKESI 1321 ALATVQIDIT EQKKIEKSIQ EQNKKLQASE EELQQNYEEL QATQEKLQQQ KEEIEKSFLE 1381 LQTTQSQLIQ SEKMASLGQL VANIAHEINT PLGAIRSSAM SIEEILEETL PTLPTFLRDL 1441 DDDFLQVFNG FVKQSSQKVD TLSSREKRVI KYDLIDELEA INIEQAEEYA DWIVDMNMYK 1501 EHDLFIPLLK TNNAKDILHV AYQLSTIIRS NRTVKTATDR AAKIVFALKN FARQDQTGEK 1561 AMVNINDSIE TTLTLYHNQI KQGIDVTRNL GEIPEFMGYP DELIQVWTNI IHNAIQAMNN 1621 NGQLFIQTSL ENNNVLISIQ DNGSGIPKKV QDRVFDAFFT TKVAGEGSGL GLDITKKIID 1681 KHNGKIWFET EEEVGTTFFI QIPLN //