LOCUS AFM02697.1 1898 aa PRT BCT 31-AUG-2017
DEFINITION Bernardetia litoralis DSM 6794 surface protein 26-residue
repeat-containing protein protein.
ACCESSION CP003345-185
PROTEIN_ID AFM02697.1
SOURCE Bernardetia litoralis DSM 6794
ORGANISM Bernardetia litoralis DSM 6794
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae;
Bernardetia.
REFERENCE 1 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Flexibacter litoralis DSM 6794
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4919337)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L.,
Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4089456
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Flexibacter litoralis DSM 6794
collection_date :: Missing
lat_lon :: 32.840 -117.258
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Marine
num_replicons :: 1
ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi04020
Type Strain :: Yes
Funding Program :: DOE-GEBA 2009
Gene Calling Method :: Prodigal, GenePRIMP
Isolation Site :: Sea water aquarium outflow, La Jolla,
California, U.S.A.
Temperature Range :: Mesophile
Gram Staining :: Gram-
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454/Illumina
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Bernardetia litoralis DSM 6794"
/mol_type="genomic DNA"
/strain="DSM 6794"
/isolation_source="sea water aquarium outflow"
/culture_collection="DSM:6794"
/type_material="type strain of Bernardetia litoralis"
/db_xref="taxon:880071"
/country="USA: La Jolla, CA"
/lat_lon="32.840 N 117.258 W"
protein /locus_tag="Fleli_0201"
/note="PFAM: HYR domain; Mycoplasma protein of unknown
function, DUF285; TIGRFAM: gliding motility-associated
C-terminal domain; bacterial surface protein 26-residue
repeat"
/transl_table=11
/db_xref="InterPro:IPR003410"
/db_xref="InterPro:IPR005046"
BEGIN
1 MVFASLLFLT LFFAGLSKQT VNAQAFRTTW ITTDGTITIP TNGGGYNYDI SWTNLTNAGV
61 GNASAIAQTG SYTINGLTNG DTYEVAITGD FPRFYMNDNA IEKTKLWTIE EWGDIEWSSM
121 ASAFYGCSNL TYTATDNPDL TGVTDMSYMF ASCTFFNGNI GGWNTSAVTS MSATFSRATS
181 FNQDIGGWNT SAVTNMSTMF SAATAFNQDI GGWNTSAVMS MGGMFQLATS FNQDIGRWNT
241 SAVTDMFGMF GNAPSFNQDI SGWNTSAVTN MGGMFNNADA FNQDIGRWNT SAVTNMRGMF
301 AGTNSFNQDI GGWNTSVVTN MISMFASTES FNQDISGWNT SAVTSMSTMF QFADAFNQDI
361 GGWNTSAVTN MSRMFNLATS FNQDIGGWNI TAVTSMDFML NNSALNIANY DATLIGWEAQ
421 NVQPNVNLGA LNLQYCNAVT ERNRLISAPN NWTIVGDAIS CPLAEINVVG NVNTIPSGTT
481 STSTNNGTDF GDVIACLNTT EVVSFTIQNT GDGVLNITGI SSTGTNATDF VINSIPTSVA
541 VGGSEIFTIT FSPSGIGNRV ATIEILNNDV DEGTYTFVVN GNGLAETQNP TITAPAPVIA
601 NTDIGMCTAS VILGTPVAND DCGTPTVTNN APASFTIGNT TVTWTATDRS GNTASATQII
661 TITDNENPII TVSPTLTANT DAGICTASNV LEIPIVSDNC GIPTITNDAP PSFPIGNTTI
721 TWTATDAAGN TASATQIITV TDNEDPTIIA PPNVNVDCPV DVILGTATTT DDCGIVTLTN
781 NAPTVFPYGV TEVTWTATDD SGNVATAIQS VTVLDVINPI MADPVSVNLL IDVGLCTVTN
841 NLTEPTISDN CAIASVTNNA PTDFPLGTTI VTWTATDEAR NTTTKIQTVN VTRGAAFVGV
901 TISSLDTVIC SNETTTFKAE GANSYVFYRN GVPMTSPSSI NEYAPPVGTF QTGDQIWVIG
961 ETNGCPDTSR IMTMIVHPLP VVDLGVDRYK CKTDTARLVA PEGDFIYDWK TLDENGDIIS
1021 VGNGNDTLFA LDTGTYFIRL ENTLTGCSTI SNRVKVFNYD DDVVVDLGED KTVCDPSDLP
1081 YRLVGSDLSH LNGTTYKWYV AGDDTIIGED SVLDITIENT YSLVVEDPRG CQISDTIRIN
1141 FTPTPDFVIT GHENPNCSTF DTLHIERTNV RGMIINWFGN GIVSTSDSNK VAIVNVSGIY
1201 TATIIDTTTE ANCSYTQSVE VFVRPNIELG LTSTTDTLRL CEGDSLVLDA FRPEHNDNFT
1261 YQWRIIESNQ TVSTNSEIAI NYEMVDNYIA NRFEIKVTDP NLIGGGTCSI LDTVIVRFDR
1321 KSGVQIDSTF IKTLCLGQTQ MLSAVGADSY LWSNGETTQT IEVTPTETGY YTFIVNGIFS
1381 TPNLCGASAD TIKFRVVPVP EIDIPESLVI CENDSIEINA FLPSHEPRYI YEWIDENTGE
1441 VIDTLANHVF KQDSANINYE PQTYKVGVYD TLGGGRCGAE SLITVTFNRT AITEITASDT
1501 LVCVGEEITL RATGATNFTW NTGETTQEIT ISSDSAGVFR YTVLGTYGDD ATQNVCDSTG
1561 TSILIQFKDI PKITLNKPDT ISICAGDSVQ FIANGGFTYS WSHSPAENSD TVVVFPTDTT
1621 TYIVTGFDTL GCSSTDTTVV LVQPQIDLGS EQQLCEGDTA IIGAPRPYGA TYLWNTGETS
1681 DSIRIRRSGL YYVEVSINEC SYTDSVQINF IEPPILSAKD TILCFEDENS DVIFHQIGVE
1741 IENYDSTARY RYQWFDENEN LVGQDSLLNV EFGGVYLARV TVEYANSCTS ITSLEVEANC
1801 DPQIFIPSAF TPNQDRLNEE WEIFGRFYSN LRINVLDRWG MEIYAATQKN SSDEIKFWDG
1861 TYKGEKVPAG VYYYEVTYTS PTDPSKTIKQ TGTVTIIY
//