LOCUS AFM02697.1 1898 aa PRT BCT 31-AUG-2017 DEFINITION Bernardetia litoralis DSM 6794 surface protein 26-residue repeat-containing protein protein. ACCESSION CP003345-185 PROTEIN_ID AFM02697.1 SOURCE Bernardetia litoralis DSM 6794 ORGANISM Bernardetia litoralis DSM 6794 Bacteria; Bacteroidota; Cytophagia; Cytophagales; Bernardetiaceae; Bernardetia. REFERENCE 1 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Flexibacter litoralis DSM 6794 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4919337) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Lu,M., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Lang,E., Kopitz,M., Brambilla,E., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (05-JUN-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4089456 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Flexibacter litoralis DSM 6794 collection_date :: Missing lat_lon :: 32.840 -117.258 depth :: Missing alt_elev :: Missing country :: USA environment :: Marine num_replicons :: 1 ref_biomaterial :: DSM 6794, ATCC 23117, IFO 15988, NBRC 15988 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04020 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: Sea water aquarium outflow, La Jolla, California, U.S.A. Temperature Range :: Mesophile Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Bernardetia litoralis DSM 6794" /mol_type="genomic DNA" /strain="DSM 6794" /isolation_source="sea water aquarium outflow" /culture_collection="DSM:6794" /type_material="type strain of Bernardetia litoralis" /db_xref="taxon:880071" /country="USA: La Jolla, CA" /lat_lon="32.840 N 117.258 W" protein /locus_tag="Fleli_0201" /note="PFAM: HYR domain; Mycoplasma protein of unknown function, DUF285; TIGRFAM: gliding motility-associated C-terminal domain; bacterial surface protein 26-residue repeat" /transl_table=11 /db_xref="InterPro:IPR003410" /db_xref="InterPro:IPR005046" BEGIN 1 MVFASLLFLT LFFAGLSKQT VNAQAFRTTW ITTDGTITIP TNGGGYNYDI SWTNLTNAGV 61 GNASAIAQTG SYTINGLTNG DTYEVAITGD FPRFYMNDNA IEKTKLWTIE EWGDIEWSSM 121 ASAFYGCSNL TYTATDNPDL TGVTDMSYMF ASCTFFNGNI GGWNTSAVTS MSATFSRATS 181 FNQDIGGWNT SAVTNMSTMF SAATAFNQDI GGWNTSAVMS MGGMFQLATS FNQDIGRWNT 241 SAVTDMFGMF GNAPSFNQDI SGWNTSAVTN MGGMFNNADA FNQDIGRWNT SAVTNMRGMF 301 AGTNSFNQDI GGWNTSVVTN MISMFASTES FNQDISGWNT SAVTSMSTMF QFADAFNQDI 361 GGWNTSAVTN MSRMFNLATS FNQDIGGWNI TAVTSMDFML NNSALNIANY DATLIGWEAQ 421 NVQPNVNLGA LNLQYCNAVT ERNRLISAPN NWTIVGDAIS CPLAEINVVG NVNTIPSGTT 481 STSTNNGTDF GDVIACLNTT EVVSFTIQNT GDGVLNITGI SSTGTNATDF VINSIPTSVA 541 VGGSEIFTIT FSPSGIGNRV ATIEILNNDV DEGTYTFVVN GNGLAETQNP TITAPAPVIA 601 NTDIGMCTAS VILGTPVAND DCGTPTVTNN APASFTIGNT TVTWTATDRS GNTASATQII 661 TITDNENPII TVSPTLTANT DAGICTASNV LEIPIVSDNC GIPTITNDAP PSFPIGNTTI 721 TWTATDAAGN TASATQIITV TDNEDPTIIA PPNVNVDCPV DVILGTATTT DDCGIVTLTN 781 NAPTVFPYGV TEVTWTATDD SGNVATAIQS VTVLDVINPI MADPVSVNLL IDVGLCTVTN 841 NLTEPTISDN CAIASVTNNA PTDFPLGTTI VTWTATDEAR NTTTKIQTVN VTRGAAFVGV 901 TISSLDTVIC SNETTTFKAE GANSYVFYRN GVPMTSPSSI NEYAPPVGTF QTGDQIWVIG 961 ETNGCPDTSR IMTMIVHPLP VVDLGVDRYK CKTDTARLVA PEGDFIYDWK TLDENGDIIS 1021 VGNGNDTLFA LDTGTYFIRL ENTLTGCSTI SNRVKVFNYD DDVVVDLGED KTVCDPSDLP 1081 YRLVGSDLSH LNGTTYKWYV AGDDTIIGED SVLDITIENT YSLVVEDPRG CQISDTIRIN 1141 FTPTPDFVIT GHENPNCSTF DTLHIERTNV RGMIINWFGN GIVSTSDSNK VAIVNVSGIY 1201 TATIIDTTTE ANCSYTQSVE VFVRPNIELG LTSTTDTLRL CEGDSLVLDA FRPEHNDNFT 1261 YQWRIIESNQ TVSTNSEIAI NYEMVDNYIA NRFEIKVTDP NLIGGGTCSI LDTVIVRFDR 1321 KSGVQIDSTF IKTLCLGQTQ MLSAVGADSY LWSNGETTQT IEVTPTETGY YTFIVNGIFS 1381 TPNLCGASAD TIKFRVVPVP EIDIPESLVI CENDSIEINA FLPSHEPRYI YEWIDENTGE 1441 VIDTLANHVF KQDSANINYE PQTYKVGVYD TLGGGRCGAE SLITVTFNRT AITEITASDT 1501 LVCVGEEITL RATGATNFTW NTGETTQEIT ISSDSAGVFR YTVLGTYGDD ATQNVCDSTG 1561 TSILIQFKDI PKITLNKPDT ISICAGDSVQ FIANGGFTYS WSHSPAENSD TVVVFPTDTT 1621 TYIVTGFDTL GCSSTDTTVV LVQPQIDLGS EQQLCEGDTA IIGAPRPYGA TYLWNTGETS 1681 DSIRIRRSGL YYVEVSINEC SYTDSVQINF IEPPILSAKD TILCFEDENS DVIFHQIGVE 1741 IENYDSTARY RYQWFDENEN LVGQDSLLNV EFGGVYLARV TVEYANSCTS ITSLEVEANC 1801 DPQIFIPSAF TPNQDRLNEE WEIFGRFYSN LRINVLDRWG MEIYAATQKN SSDEIKFWDG 1861 TYKGEKVPAG VYYYEVTYTS PTDPSKTIKQ TGTVTIIY //