LOCUS AEO98282.1 1053 aa PRT HTG 28-NOV-2011
DEFINITION Emiliania huxleyi virus 203 RNA polymerase subunit II protein.
ACCESSION JF974291-272
PROTEIN_ID AEO98282.1
SOURCE Emiliania huxleyi virus 203
ORGANISM Emiliania huxleyi virus 203
Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota;
Megaviricetes; Algavirales; Phycodnaviridae; Coccolithovirus.
REFERENCE 1 (bases 1 to 400520)
AUTHORS Nissimov,J.I., Worthy,C.A., Rooks,P., Napier,J.A., Kimmance,S.A.,
Henn,M.R., Ogata,H. and Allen,M.J.
TITLE Draft Genome Sequence of the Coccolithovirus Emiliania huxleyi
Virus 203
JOURNAL J. Virol. 85 (24), 13468-13469 (2011)
PUBMED 22106382
REFERENCE 2 (bases 1 to 400520)
AUTHORS Henn,M.R., Allen,M., Levin,J., Malboeuf,C., Casali,M., Russ,C.,
Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C.,
Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E.,
Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S.,
Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L.,
Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T.,
Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B.,
Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE The Genome Sequence of Emiliania huxleyi virus 203
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 400520)
AUTHORS Henn,M.R., Allen,M., Levin,J., Malboeuf,C., Casali,M., Russ,C.,
Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C.,
Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E.,
Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S.,
Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L.,
Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T.,
Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B.,
Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genome Sequencing Platform
TITLE Direct Submission
JOURNAL Submitted (22-NOV-2010) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
COMMENT This genome was sequenced by the Broad Institute and co-owned with
CAMERA.
##Metadata-START##
Isolation method :: triple-plaque-purified
Template preparation method :: CsCl-gradient
Phage/virus type :: DNA:ds Viral DNA
Phage/virus "hybrid" information :: not applicable
Phage/virus taxonomy :: Coccolithoviridae
Phage/virus strain :: Strain 203
Morphology :: Icosahedral
Latitude :: 50.006N
Longitude :: 4.3145W
Depth (m) :: 15.00
Collection date :: 27-Jul-2003
Sample collection site :: English Channel
Filter fraction (um) :: 0.45
Volume filtered (L) :: 1.0
Habitat description :: Collected from natural E.
huxleyi bloom
Other metadata available :: http://www.westernchannelobserv
atory.org.uk/data.php
References :: PMID: 17359269; PMID: 16099989;
PMID: 12209309; PMID: 16553948
Lab Host :: Emiliania huxleyi 1516
##Metadata-END##
* NOTE: This is a 'working draft' sequence. It currently
* consists of 7 contigs. The true order of the pieces
* is not known and their order in this sequence record is
* arbitrary. Gaps between the contigs are represented as
* runs of N, but the exact sizes of the gaps are unknown.
* This record will be updated with the finished sequence
* as soon as it is available and the accession number will
* be preserved.
* 1 20862: contig of 20862 bp in length
* 20863 20962: gap of unknown length
* 20963 45640: contig of 24678 bp in length
* 45641 45740: gap of unknown length
* 45741 78538: contig of 32798 bp in length
* 78539 78638: gap of unknown length
* 78639 123169: contig of 44531 bp in length
* 123170 123269: gap of unknown length
* 123270 178489: contig of 55220 bp in length
* 178490 178589: gap of unknown length
* 178590 257650: contig of 79061 bp in length
* 257651 257750: gap of unknown length
* 257751 400520: contig of 142770 bp in length.
FEATURES Qualifiers
source /organism="Emiliania huxleyi virus 203"
/mol_type="genomic DNA"
/strain="203"
/isolation_source="English Channel"
/db_xref="taxon:181212"
/lab_host="Emiliania huxleyi 1516"
/lat_lon="50.006 N 4.3145 W"
/collection_date="27-Jul-2003"
protein /locus_tag="ELVG_00233"
BEGIN
1 MIPVHGLSTN AKVVKKVNFS VYGSDTIRQN AVTRVNEIAL YTRGIPTHNG VNSLAMGSSD
61 RRIRCTTCNE LMQKCPGHNG EIRLPLPVYQ ALYIDHTLKV LRSVCFFCSE ICLTDEDKVA
121 LMEKYTDDKT RFNHTYAIAR TRKKCPHCKG IRPSYVRGPL GIKTEWVDKS FDSEEEQEYA
181 MQKFTPALAY SILDNIKDID AKNFFGKGLH PRDLIATSVL VPPPIIRPAI STAEGSRTKG
241 QDDITLRLQE INRRGNELRL CMNKQEDSGL PTFLCDANKV LPPKTDTITY TVVDRLLNVD
301 ALTPDLIDRW NRLQADVFGL VNPAAIRGGM PASMANNNRN SANGKYIIDR IRGKNGRFRN
361 CLMGKRVNFS GRSVITPDST IDVDQLGVPY ELAMILTVPE KVTPSNIADL RTRILNGPTE
421 LIGAQSVINT EGDLISLKSC KNRADIVLRI GWIVERHLKN GDWVIFNRQP TLHRMGFNGH
481 RVVLTKGKTF RLNLSVCAVY NADFDGDEMN IHVCQSACAT SEVSTLMAIN RNIISAQNNK
541 PCFGIVQDSL VGAWLMTDPS VFLTRADMLR FRIYVKFANN GTTMLPPPAI SKPKELWTGS
601 QLISFVFPYT LMYQRGSISG ITSYDTKDLL IQNGQILFGR LSKSTLGATA GAISDIIHHE
661 HGGPKKAVEF LSDVQRVVNQ WLLYKNSFSI GASDCVTNEQ SHNEVVECIK SAVNNSKMIL
721 TSKVPKSLKE MAEGATTRIL SDVIMKTATI IKNNAPPDNS IITCVTAGSK GSPLNIAQVC
781 GQVGQQIVGG ERILNGTSGR TLPCFKHGEH ATVNANGYIQ NSFMLGLQPT EFFFSAMSGR
841 EGLVDTAVKT ANSGYIQRCL VKASEDNMCN YDGTIRNAQG MVVQFKYADN FDPCKVERIK
901 VEPLLMTSEE IKRNAGPLEY DVIMSLRENA QKVLSQSNKP LMDVVLLPIN ISRMFESATW
961 NNDVPHEFDE ESLLTAVSEV VHEIVKKHPV CKYVVPLYIQ WCMRIGNIPE HLNVKAFLCE
1021 VKHRCLSSVV AGGDAVGNTA ALSIGEPSTQ AYI
//