LOCUS AEE27231.1 293 aa PRT PLN 20-JUL-2017
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002684-24
PROTEIN_ID AEE27231.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 30427671)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 30427671)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 30427671)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 30427671)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
protein /locus_tag="AT1G01080"
/gene_synonym="T25K16.19"
/gene_synonym="T25K16_19"
/inference="Similar to RNA sequence,
EST:INSD:EH976658.1,INSD:DR326291.1,INSD:EH830851.1,
INSD:AV796372.1,INSD:DR326298.1,INSD:EL227681.1,
INSD:DR239547.1,INSD:DR326292.1,INSD:EG517150.1,
INSD:AF066871.1,INSD:DR326297.1,INSD:EL064291.1,
INSD:EL057454.1,INSD:EH970326.1,INSD:EL103429.1,
INSD:DR239585.1,INSD:EG513769.1,INSD:DR232463.1,
INSD:BP786153.1,INSD:AV556653.1,INSD:DR373419.1,
INSD:EL268375.1,INSD:EH973070.1,INSD:BP613432.1,
INSD:DR326294.1,INSD:EL217393.1,INSD:DR239584.1,
INSD:BP786560.1,INSD:EH968735.1,INSD:DR259580.1,
INSD:EL151156.1,INSD:CB262280.1,INSD:DR326290.1,
INSD:EH967120.1,INSD:AI099516.1,INSD:AI996061.1,
INSD:BP810876.1,INSD:EG514078.1,INSD:EL236484.1,
INSD:DR326293.1,INSD:EL052914.1,INSD:ES132460.1,
INSD:BP666924.1,INSD:BP783234.1,INSD:DR239556.1,
INSD:DR326299.1,INSD:EG517151.1,INSD:EH948741.1,
INSD:DR326289.1,INSD:DR326296.1,INSD:AV522419.1,
INSD:EH891680.1,INSD:BP844284.1,INSD:DR326300.1,
INSD:EH958364.1,INSD:ES120608.1"
/inference="similar to RNA sequence,
mRNA:INSD:AF419554.1,INSD:AY086138.1,INSD:AY132012.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast stroma, nucleus, chloroplast,
chloroplast envelope; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); BEST Arabidopsis thaliana protein
match is: RNA-binding (RRM/RBD/RNP motifs) family protein
(TAIR:AT1G60000.1); Has 509067 Blast hits to 499893
proteins in 22124 species: Archae - 10819; Bacteria -
303967; Metazoa - 99035; Fungi - 14863; Plants - 31737;
Viruses - 35534; Other Eukaryotes - 13112 (source: NCBI
BLink)."
/db_xref="Araport:AT1G01080"
/db_xref="TAIR:AT1G01080"
intron_pos 139:0 (1/3)
intron_pos 173:0 (2/3)
intron_pos 276:0 (3/3)
BEGIN
1 MAASCFAIPL SSSSRSSHNA IPKYKTLISS SSYSYLESLK LQFSSSNSFH HSSLSRPFVA
61 QPLQIKVSSS ELSVLDEEKE EEVVKGEAEP NKDSVVSKAE PVKKPRPCEL YVCNIPRSYD
121 IAQLLDMFQP FGTVISVEVS RNPQTGESRG SGYVTMGSIN SAKIAIASLD GTEVGGREMR
181 VRYSVDMNPG TRRNPEVLNS TPKKILMYES QHKVYVGNLP WFTQPDGLRN HFSKFGTIVS
241 TRVLHDRKTG RNRVFAFLSF TSGEERDAAL SFNGTQYEGR RIIVREGIEK SES
//