LOCUS AEE27226.1 644 aa PRT PLN 20-JUL-2017
DEFINITION Arabidopsis thaliana Homeodomain-like superfamily protein protein.
ACCESSION CP002684-14
PROTEIN_ID AEE27226.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 30427671)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 30427671)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 30427671)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 30427671)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
protein /gene="LHY"
/locus_tag="AT1G01060"
/gene_synonym="LATE ELONGATED HYPOCOTYL"
/gene_synonym="LATE ELONGATED HYPOCOTYL 1"
/gene_synonym="LHY1"
/gene_synonym="T25K16.6"
/gene_synonym="T25K16_6"
/inference="Similar to RNA sequence,
EST:INSD:DR262753.1,INSD:EG520850.1,INSD:AV442073.1,
INSD:EL285160.1,INSD:EH811528.1,INSD:AV793100.1,
INSD:EL221576.1,INSD:AV807028.1,INSD:BX839544.1,
INSD:DR262754.1,INSD:AA713203.1,INSD:AV809310.1,
INSD:AA650979.1,INSD:AV786398.1,INSD:AV793959.1,
INSD:EL071273.1,INSD:BX840279.1,INSD:BP787483.1,
INSD:AV805408.1,INSD:AV439916.1,INSD:DR750570.1,
INSD:CF773267.1,INSD:R30439.1,INSD:AV525957.1,
INSD:DR750341.1,INSD:EG517069.1,INSD:EH853476.1,
INSD:DR262751.1,INSD:EH900352.1,INSD:EH957137.1,
INSD:AV528276.1,INSD:BP793781.1,INSD:AV518592.1,
INSD:DR262755.1,INSD:BP611805.1,INSD:DR262752.1,
INSD:EL210103.1,INSD:BP783401.1,INSD:AV519727.1,
INSD:EH965397.1,INSD:BX836221.1,INSD:AV794517.1,
INSD:EH897895.1,INSD:BP785164.1,INSD:AV519209.1,
INSD:EL125752.1,INSD:EG520849.1,INSD:EG517068.1,
INSD:EL187904.1,INSD:EL098580.1,INSD:EH906782.1,
INSD:EL269840.1,INSD:EL310869.1,INSD:AV816640.1,
INSD:EH922478.1,INSD:BX835664.1,INSD:EL011803.1,
INSD:EH968369.1,INSD:EL201800.1,INSD:EL206414.1,
INSD:AV792580.1,INSD:BP604428.1,INSD:AV519732.1,
INSD:EL069143.1"
/note="LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro
DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb,
DNA-binding (InterPro:IPR014778), Homeodomain-like
(InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF
class (InterPro:IPR006447), HTH transcriptional regulator,
Myb-type, DNA-binding (InterPro:IPR017930); BEST
Arabidopsis thaliana protein match is: circadian clock
associated 1 (TAIR:AT2G46830.1); Has 2567 Blast hits to
2041 proteins in 275 species: Archae - 2; Bacteria - 252;
Metazoa - 294; Fungi - 166; Plants - 1044; Viruses - 30;
Other Eukaryotes - 779 (source: NCBI BLink)."
/db_xref="Araport:AT1G01060"
/db_xref="TAIR:AT1G01060"
intron_pos 14:0 (1/6)
intron_pos 51:1 (2/6)
intron_pos 72:0 (3/6)
intron_pos 150:0 (4/6)
intron_pos 177:0 (5/6)
intron_pos 534:0 (6/6)
BEGIN
1 MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ
61 IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP NTPYPRKPGN NGTSSSQVSS
121 AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD
181 IETSKTSTVD NAVQDVPKKN KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG
241 MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301 MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS
361 HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE KQNTALQDQN LASKSPASSS
421 DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET
481 DALDKMEKDK EDVKETDENQ PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA
541 LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601 TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST
//