LOCUS ADU49904.1 1635 aa PRT BCT 08-JAN-2015
DEFINITION Intrasporangium calvum DSM 43043 ATP dependent helicase,
Lhr family protein.
ACCESSION CP002343-3342
PROTEIN_ID ADU49904.1
SOURCE Intrasporangium calvum DSM 43043
ORGANISM Intrasporangium calvum DSM 43043
Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae;
Intrasporangium.
REFERENCE 1 (bases 1 to 4024382)
AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S.,
Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S.,
Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P.
and Lapidus,A.
TITLE Complete genome sequence of Intrasporangium calvum type strain (7
KIP)
JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010)
PUBMED 21304734
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Intrasporangium calvum DSM 43043
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083316
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Intrasporangium calvum 7KIP, DSM 43043
collection_date :: 1967
lat_lon :: 55.753 37.604
depth :: Missing
alt_elev :: Missing
country :: Russia
environment :: Air
num_replicons :: Missing
ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989,
IMET 7816, JCM 3097, KCC A-0097, NBRC 12989,
NCIB 10167
biotic_relationship :: Free living
trophic_level :: Chemoorganotroph
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi02320
Type Strain :: Yes
Greengenes ID :: 90541
Funding Program :: DOE-GEBA 2007
Number of Reads :: 847906 pyrosequencing, 11758818 Illumina
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Air in a school dining room
Isolation Comments :: isolated by L.V. Kalakoutskii
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: Gram+
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Intrasporangium calvum DSM 43043"
/mol_type="genomic DNA"
/strain="DSM 43043"
/isolation_source="air in a school dining room"
/culture_collection="DSM:43043"
/type_material="type strain of Intrasporangium calvum"
/db_xref="taxon:710696"
/country="Russia"
/lat_lon="55.753 N 37.604 E"
/collection_date="1967"
/collected_by="L.V. Kalakoutskii"
protein /locus_tag="Intca_3424"
/note="COGs: COG1201 Lhr-like helicase; InterProIPR011545:
IPR001650: IPR013701: IPR014021: IPR 014001; KEGG:
kra:Krad_1489 DEAD/H associated domain protein; PFAM:
DEAD/H associated domain protein; DEAD/DEAH box helicase
domain protein; helicase domain protein; SMART: DEAD-like
helicase; helicase domain protein; SPTR: Putative
ATP-dependent DNA helicase; PFAM: Helicase conserved
C-terminal domain; DEAD/H associated; DEAD/DEAH box
helicase"
/transl_table=11
BEGIN
1 MAAVLEELEA TVAVRRLEHV PGWCHLGVAG WGSMATQDQA SDDVLDRFSP ATAAWFRSSF
61 RAPTTAQSGA WDAISSGHHC VVVAPTGSGK TLSAFLWAID RMARDPVPED RLARCRVLYI
121 SPMKALAVDV ERNLRAPLVG IGHAATRLGL PVPQIGVSVR SGDTPAAERR AFARTPSDIL
181 ITTPESLFLM LTSSVREALR GVETVILDEV HAVAGTKRGA HLALSLERLD ALLEQPAQRV
241 GLSATVRPVE EVARFLAGGR PVEVVQPPST KEWDLDVVVP VPDLGELSGA PAELSPGVPD
301 LSGPAAGNAP RASIWPHVEE RIADLISEHR STLVFANSRR LAERLTARLN EIWEERQTEA
361 YAAELAPSEG DVGAGPAERH TGPLRPPAQV MAQSGAGRGA PAVLARAHHG SVSKEHRAAI
421 EEDLKAGRLP AVVATSSLEL GIDMGLVDLV VQVESPPSVA SGLQRVGRAG HQVGAVSRGV
481 LFPKFRGDLV QTAVVVERMR AGAIESLRVP ANPVDVLAQH VVAMCALDEW TVDDVEALVR
541 RTASFAALPR SVLEATLDML AGKYPSDEFA ELRPRIVWDR VTDTLTGRRG AQRLAVTSGG
601 TIPDRGLYAV FLASGEGPGR RVGELDEEMV YESRVGDVFT LGTSSWRIED ITHDRVLVTP
661 APGQAGRLPF WKGDQQGRPA ELGRAVGAFV REVVGLSPAK ARARVVEAGL DEWAADNLLA
721 YLSEQQEATR HVPDDRTIVV ERFRDEIGDW RVAVLSPFGG QVHAPWALCV AARMRERFGI
781 DVQAMHGDDG IVFRLPDLEL DDSGGAPGPS ATSGEIGRQL VELVTLEPED VAELVTQELG
841 GSALFAARFR ECAARALLLP RRRPDRRQPL WQQRQRAAQL LEVASRYPTF PIVLETVREC
901 VQDVFDVPGL VELMTDIRSR AVSVVDVESA RPSPFAKSLA FGYVAQYLYE GDSPLAERRA
961 AALALDPTLL SELLGQSDAL ALRDLLDAAA VARTEAELQR LTPERAARDA DDLADLVRVL
1021 GPLSTTDVVA RSTEELVASG VVAALQSLEA ARRVIAVRVA GADRWAAVED AGRLRDALGT
1081 ALPVGVPTVF LESVPDPLGD LVARFARTHG PFTVHTVAEW WGLGPAVVHD ALRRLVSAGR
1141 VVEGELLPTE SGGGHGAEFC DAEVLRLLRR RSLAALRHEV EPVGQGDLAR FLPQWQGIGS
1201 GQRGREGLLR AVEQLTGAVV PASALETLVL PARVADYRPA LLDEVMSSGE VVWRGHGSLP
1261 GDDGWVSLHL ADTAHLTLAP PPPTDLTDAE DAVLEALAGG GAWFFHPLTE RVRAAGADLR
1321 DGEVLDAVWS LLWSGRVTND TVAPLRALLS GGRTAHRRTA TAPRSARYAG RRGSLGRLGS
1381 LRGSLSALPP ERSAPPTGVG RWTLLPTPES DPTVRAVTTA ELLLDRYGVL TRGSVVSEEV
1441 PGGFAAVYRV LAAAEEAGRV RRGYFVESLG ASQFGSTGAV DRLRSMGRLV PGSQPSGIRP
1501 DSPSGALVLA ASDPANPYGA ALAWPDRPTD GAADLPARKG HQPARKAGAL VVLVDGALVL
1561 YVERGGRTML CWAEDPATLQ AAADALALAV REGALGRLTV EKADGAPVLG SDHPLVAALS
1621 EAGFHMTPRG LRLRR
//