LOCUS ADU49904.1 1635 aa PRT BCT 08-JAN-2015 DEFINITION Intrasporangium calvum DSM 43043 ATP dependent helicase, Lhr family protein. ACCESSION CP002343-3342 PROTEIN_ID ADU49904.1 SOURCE Intrasporangium calvum DSM 43043 ORGANISM Intrasporangium calvum DSM 43043 Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium. REFERENCE 1 (bases 1 to 4024382) AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S., Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. TITLE Complete genome sequence of Intrasporangium calvum type strain (7 KIP) JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010) PUBMED 21304734 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Intrasporangium calvum DSM 43043 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083316 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Intrasporangium calvum 7KIP, DSM 43043 collection_date :: 1967 lat_lon :: 55.753 37.604 depth :: Missing alt_elev :: Missing country :: Russia environment :: Air num_replicons :: Missing ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02320 Type Strain :: Yes Greengenes ID :: 90541 Funding Program :: DOE-GEBA 2007 Number of Reads :: 847906 pyrosequencing, 11758818 Illumina Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Air in a school dining room Isolation Comments :: isolated by L.V. Kalakoutskii Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Intrasporangium calvum DSM 43043" /mol_type="genomic DNA" /strain="DSM 43043" /isolation_source="air in a school dining room" /culture_collection="DSM:43043" /type_material="type strain of Intrasporangium calvum" /db_xref="taxon:710696" /country="Russia" /lat_lon="55.753 N 37.604 E" /collection_date="1967" /collected_by="L.V. Kalakoutskii" protein /locus_tag="Intca_3424" /note="COGs: COG1201 Lhr-like helicase; InterProIPR011545: IPR001650: IPR013701: IPR014021: IPR 014001; KEGG: kra:Krad_1489 DEAD/H associated domain protein; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative ATP-dependent DNA helicase; PFAM: Helicase conserved C-terminal domain; DEAD/H associated; DEAD/DEAH box helicase" /transl_table=11 BEGIN 1 MAAVLEELEA TVAVRRLEHV PGWCHLGVAG WGSMATQDQA SDDVLDRFSP ATAAWFRSSF 61 RAPTTAQSGA WDAISSGHHC VVVAPTGSGK TLSAFLWAID RMARDPVPED RLARCRVLYI 121 SPMKALAVDV ERNLRAPLVG IGHAATRLGL PVPQIGVSVR SGDTPAAERR AFARTPSDIL 181 ITTPESLFLM LTSSVREALR GVETVILDEV HAVAGTKRGA HLALSLERLD ALLEQPAQRV 241 GLSATVRPVE EVARFLAGGR PVEVVQPPST KEWDLDVVVP VPDLGELSGA PAELSPGVPD 301 LSGPAAGNAP RASIWPHVEE RIADLISEHR STLVFANSRR LAERLTARLN EIWEERQTEA 361 YAAELAPSEG DVGAGPAERH TGPLRPPAQV MAQSGAGRGA PAVLARAHHG SVSKEHRAAI 421 EEDLKAGRLP AVVATSSLEL GIDMGLVDLV VQVESPPSVA SGLQRVGRAG HQVGAVSRGV 481 LFPKFRGDLV QTAVVVERMR AGAIESLRVP ANPVDVLAQH VVAMCALDEW TVDDVEALVR 541 RTASFAALPR SVLEATLDML AGKYPSDEFA ELRPRIVWDR VTDTLTGRRG AQRLAVTSGG 601 TIPDRGLYAV FLASGEGPGR RVGELDEEMV YESRVGDVFT LGTSSWRIED ITHDRVLVTP 661 APGQAGRLPF WKGDQQGRPA ELGRAVGAFV REVVGLSPAK ARARVVEAGL DEWAADNLLA 721 YLSEQQEATR HVPDDRTIVV ERFRDEIGDW RVAVLSPFGG QVHAPWALCV AARMRERFGI 781 DVQAMHGDDG IVFRLPDLEL DDSGGAPGPS ATSGEIGRQL VELVTLEPED VAELVTQELG 841 GSALFAARFR ECAARALLLP RRRPDRRQPL WQQRQRAAQL LEVASRYPTF PIVLETVREC 901 VQDVFDVPGL VELMTDIRSR AVSVVDVESA RPSPFAKSLA FGYVAQYLYE GDSPLAERRA 961 AALALDPTLL SELLGQSDAL ALRDLLDAAA VARTEAELQR LTPERAARDA DDLADLVRVL 1021 GPLSTTDVVA RSTEELVASG VVAALQSLEA ARRVIAVRVA GADRWAAVED AGRLRDALGT 1081 ALPVGVPTVF LESVPDPLGD LVARFARTHG PFTVHTVAEW WGLGPAVVHD ALRRLVSAGR 1141 VVEGELLPTE SGGGHGAEFC DAEVLRLLRR RSLAALRHEV EPVGQGDLAR FLPQWQGIGS 1201 GQRGREGLLR AVEQLTGAVV PASALETLVL PARVADYRPA LLDEVMSSGE VVWRGHGSLP 1261 GDDGWVSLHL ADTAHLTLAP PPPTDLTDAE DAVLEALAGG GAWFFHPLTE RVRAAGADLR 1321 DGEVLDAVWS LLWSGRVTND TVAPLRALLS GGRTAHRRTA TAPRSARYAG RRGSLGRLGS 1381 LRGSLSALPP ERSAPPTGVG RWTLLPTPES DPTVRAVTTA ELLLDRYGVL TRGSVVSEEV 1441 PGGFAAVYRV LAAAEEAGRV RRGYFVESLG ASQFGSTGAV DRLRSMGRLV PGSQPSGIRP 1501 DSPSGALVLA ASDPANPYGA ALAWPDRPTD GAADLPARKG HQPARKAGAL VVLVDGALVL 1561 YVERGGRTML CWAEDPATLQ AAADALALAV REGALGRLTV EKADGAPVLG SDHPLVAALS 1621 EAGFHMTPRG LRLRR //