LOCUS ADU48810.1 1197 aa PRT BCT 08-JAN-2015
DEFINITION Intrasporangium calvum DSM 43043 condensin subunit Smc protein.
ACCESSION CP002343-2248
PROTEIN_ID ADU48810.1
SOURCE Intrasporangium calvum DSM 43043
ORGANISM Intrasporangium calvum DSM 43043
Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae;
Intrasporangium.
REFERENCE 1 (bases 1 to 4024382)
AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S.,
Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S.,
Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P.
and Lapidus,A.
TITLE Complete genome sequence of Intrasporangium calvum type strain (7
KIP)
JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010)
PUBMED 21304734
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Intrasporangium calvum DSM 43043
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083316
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Intrasporangium calvum 7KIP, DSM 43043
collection_date :: 1967
lat_lon :: 55.753 37.604
depth :: Missing
alt_elev :: Missing
country :: Russia
environment :: Air
num_replicons :: Missing
ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989,
IMET 7816, JCM 3097, KCC A-0097, NBRC 12989,
NCIB 10167
biotic_relationship :: Free living
trophic_level :: Chemoorganotroph
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi02320
Type Strain :: Yes
Greengenes ID :: 90541
Funding Program :: DOE-GEBA 2007
Number of Reads :: 847906 pyrosequencing, 11758818 Illumina
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Air in a school dining room
Isolation Comments :: isolated by L.V. Kalakoutskii
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: Gram+
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Intrasporangium calvum DSM 43043"
/mol_type="genomic DNA"
/strain="DSM 43043"
/isolation_source="air in a school dining room"
/culture_collection="DSM:43043"
/type_material="type strain of Intrasporangium calvum"
/db_xref="taxon:710696"
/country="Russia"
/lat_lon="55.753 N 37.604 E"
/collection_date="1967"
/collected_by="L.V. Kalakoutskii"
protein /locus_tag="Intca_2301"
/note="COGs: COG1196 Chromosome segregation ATPase;
InterPro IPR011890: IPR017871: IPR003395: IPR010935; KEGG:
cfl:Cfla_1462 chromosome segregation protein SMC; PFAM:
SMC domain protein; SMCs flexible hinge domain-containing
protein; SPTR: Putative chromosome associated protein;
TIGRFAM: chromosome segregation protein SMC; PFAM:
RecF/RecN/SMC N terminal domain; SMC proteins Flexible
Hinge Domain; TIGRFAM: chromosome segregation protein SMC,
common bacterial type"
/transl_table=11
BEGIN
1 MYVKSLTLKG FKSFASATHL RLEPGITCIV GPNGSGKSNV VDALAWVMGE QGAKSLRGGK
61 MEDVIFAGTA GRAPLGRAEV ALTIDNTDGA LPIDYTEVTI ARTMFRNGGS DYSINGTPCR
121 LLDIQELLSD SGIGREMHVI VGQGQLDTVL RATPEERRGF IEEAAGVLKH RKRKERALRK
181 LETMEANLTR VHDLTGEIRR QLGPLGRQAE TARRAAVIQT DARDARLRLL ADDLVQLTST
241 LEQEVADESA LIQRRTEVEE AMAELGQRIT GLERAAEDAR PALAQAQDQY VSLSRLVERM
301 AATLSLAAER VRLLSEDDGG ADESQSTRDP EQLRAQAADV REQEEMLLAE LDELKATLEE
361 AVLTRNEAER SYAEETSRLA RATRAAADRR EGLAKLGGQV GAKASRIEAR EAELGRLRST
421 AEQAQRRAAE AEREFAGLEA GVAEDEEGEE GLDSDYEQAA AELEAAEAEV ARWREAEQAA
481 DRARTTAAAR VETLELSLSR KDGAAALLAT ARDDLEAHGI IGSVASLVTV DPGLENAVAA
541 ALGAAAEALA VSSLDAAARA LDTLRVQDAG QASLLVSESA GRVDDSAWPA LPAGARWARD
601 VVHCPEGVRP ALDRALERVA LVEDPASAAR LVRSEPGVTA VTRGGDVFAP GLVRGGSLAA
661 PSLLELQAAL EAAQTQVTES TRAGERARFA LAAAESTRAE VNDRVEATLE RLHESDARMS
721 AIAERLGSLG QTLRAARAEV ERTERAIADA TAALEADQTE HAELLERLEA ASVEGEIEAE
781 PSTEERDRLD AVAREARTTE TELRLGLHTR EERVRALRDR AEALERAARH EEETRERLAA
841 RRARREREAT VAEAVRVAAA WAHDLLTESA EEADAARRSA EQARTERDAE LAVVRRDLAT
901 LQNELRELTD SVHRDEVARA QQRLRIEQLQ QKAVEELGIS PEDLVEEYGP HQLVPAVPDP
961 AADPDAPQPE PAPFVREAQE KRLRQAERKL SALGRINPLA LEEFAALEER HKFLTEQLED
1021 LKNSKRDLLD IVKEVDERVE RVFAEAFADT AVQFERVFQR LFPGGEGRLI LTDPSNMLTT
1081 GLEVEARPPG KKIKRLSLLS GGERSLVAVA LLVAIFKARP SPFYIMDEVE AALDDANLGR
1141 LLTLFEELRD SSQLIVITHQ KKTMEIADAL YGVSMRGDGV TTVVSQRLRD VTAQQSA
//