LOCUS ADU48810.1 1197 aa PRT BCT 08-JAN-2015 DEFINITION Intrasporangium calvum DSM 43043 condensin subunit Smc protein. ACCESSION CP002343-2248 PROTEIN_ID ADU48810.1 SOURCE Intrasporangium calvum DSM 43043 ORGANISM Intrasporangium calvum DSM 43043 Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium. REFERENCE 1 (bases 1 to 4024382) AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S., Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. TITLE Complete genome sequence of Intrasporangium calvum type strain (7 KIP) JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010) PUBMED 21304734 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Intrasporangium calvum DSM 43043 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083316 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Intrasporangium calvum 7KIP, DSM 43043 collection_date :: 1967 lat_lon :: 55.753 37.604 depth :: Missing alt_elev :: Missing country :: Russia environment :: Air num_replicons :: Missing ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02320 Type Strain :: Yes Greengenes ID :: 90541 Funding Program :: DOE-GEBA 2007 Number of Reads :: 847906 pyrosequencing, 11758818 Illumina Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Air in a school dining room Isolation Comments :: isolated by L.V. Kalakoutskii Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Intrasporangium calvum DSM 43043" /mol_type="genomic DNA" /strain="DSM 43043" /isolation_source="air in a school dining room" /culture_collection="DSM:43043" /type_material="type strain of Intrasporangium calvum" /db_xref="taxon:710696" /country="Russia" /lat_lon="55.753 N 37.604 E" /collection_date="1967" /collected_by="L.V. Kalakoutskii" protein /locus_tag="Intca_2301" /note="COGs: COG1196 Chromosome segregation ATPase; InterPro IPR011890: IPR017871: IPR003395: IPR010935; KEGG: cfl:Cfla_1462 chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain-containing protein; SPTR: Putative chromosome associated protein; TIGRFAM: chromosome segregation protein SMC; PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain; TIGRFAM: chromosome segregation protein SMC, common bacterial type" /transl_table=11 BEGIN 1 MYVKSLTLKG FKSFASATHL RLEPGITCIV GPNGSGKSNV VDALAWVMGE QGAKSLRGGK 61 MEDVIFAGTA GRAPLGRAEV ALTIDNTDGA LPIDYTEVTI ARTMFRNGGS DYSINGTPCR 121 LLDIQELLSD SGIGREMHVI VGQGQLDTVL RATPEERRGF IEEAAGVLKH RKRKERALRK 181 LETMEANLTR VHDLTGEIRR QLGPLGRQAE TARRAAVIQT DARDARLRLL ADDLVQLTST 241 LEQEVADESA LIQRRTEVEE AMAELGQRIT GLERAAEDAR PALAQAQDQY VSLSRLVERM 301 AATLSLAAER VRLLSEDDGG ADESQSTRDP EQLRAQAADV REQEEMLLAE LDELKATLEE 361 AVLTRNEAER SYAEETSRLA RATRAAADRR EGLAKLGGQV GAKASRIEAR EAELGRLRST 421 AEQAQRRAAE AEREFAGLEA GVAEDEEGEE GLDSDYEQAA AELEAAEAEV ARWREAEQAA 481 DRARTTAAAR VETLELSLSR KDGAAALLAT ARDDLEAHGI IGSVASLVTV DPGLENAVAA 541 ALGAAAEALA VSSLDAAARA LDTLRVQDAG QASLLVSESA GRVDDSAWPA LPAGARWARD 601 VVHCPEGVRP ALDRALERVA LVEDPASAAR LVRSEPGVTA VTRGGDVFAP GLVRGGSLAA 661 PSLLELQAAL EAAQTQVTES TRAGERARFA LAAAESTRAE VNDRVEATLE RLHESDARMS 721 AIAERLGSLG QTLRAARAEV ERTERAIADA TAALEADQTE HAELLERLEA ASVEGEIEAE 781 PSTEERDRLD AVAREARTTE TELRLGLHTR EERVRALRDR AEALERAARH EEETRERLAA 841 RRARREREAT VAEAVRVAAA WAHDLLTESA EEADAARRSA EQARTERDAE LAVVRRDLAT 901 LQNELRELTD SVHRDEVARA QQRLRIEQLQ QKAVEELGIS PEDLVEEYGP HQLVPAVPDP 961 AADPDAPQPE PAPFVREAQE KRLRQAERKL SALGRINPLA LEEFAALEER HKFLTEQLED 1021 LKNSKRDLLD IVKEVDERVE RVFAEAFADT AVQFERVFQR LFPGGEGRLI LTDPSNMLTT 1081 GLEVEARPPG KKIKRLSLLS GGERSLVAVA LLVAIFKARP SPFYIMDEVE AALDDANLGR 1141 LLTLFEELRD SSQLIVITHQ KKTMEIADAL YGVSMRGDGV TTVVSQRLRD VTAQQSA //