LOCUS ADU47803.1 1482 aa PRT BCT 08-JAN-2015
DEFINITION Intrasporangium calvum DSM 43043 FHA domain containing
protein protein.
ACCESSION CP002343-1241
PROTEIN_ID ADU47803.1
SOURCE Intrasporangium calvum DSM 43043
ORGANISM Intrasporangium calvum DSM 43043
Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae;
Intrasporangium.
REFERENCE 1 (bases 1 to 4024382)
AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S.,
Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S.,
Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P.
and Lapidus,A.
TITLE Complete genome sequence of Intrasporangium calvum type strain (7
KIP)
JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010)
PUBMED 21304734
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Intrasporangium calvum DSM 43043
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083316
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Intrasporangium calvum 7KIP, DSM 43043
collection_date :: 1967
lat_lon :: 55.753 37.604
depth :: Missing
alt_elev :: Missing
country :: Russia
environment :: Air
num_replicons :: Missing
ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989,
IMET 7816, JCM 3097, KCC A-0097, NBRC 12989,
NCIB 10167
biotic_relationship :: Free living
trophic_level :: Chemoorganotroph
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi02320
Type Strain :: Yes
Greengenes ID :: 90541
Funding Program :: DOE-GEBA 2007
Number of Reads :: 847906 pyrosequencing, 11758818 Illumina
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Air in a school dining room
Isolation Comments :: isolated by L.V. Kalakoutskii
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: Gram+
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Intrasporangium calvum DSM 43043"
/mol_type="genomic DNA"
/strain="DSM 43043"
/isolation_source="air in a school dining room"
/culture_collection="DSM:43043"
/type_material="type strain of Intrasporangium calvum"
/db_xref="taxon:710696"
/country="Russia"
/lat_lon="55.753 N 37.604 E"
/collection_date="1967"
/collected_by="L.V. Kalakoutskii"
protein /locus_tag="Intca_1285"
/note="COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE
and related protein; InterPro IPR019793: IPR000253:
IPR002543: IPR003593; KEGG: tcu:Tcur_4147 cell
divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE;
Forkhead-associated protein; SMART: Forkhead-associated
protein; AAA ATPase; SPTR: Cell divisionFtsK/SpoIIIE;
PFAM: FtsK/SpoIIIE family; FHA domain"
/transl_table=11
BEGIN
1 MRLRMGLVDP STARVRDVVI DTDENGDTPG EHPVTFKEVR PRLAELLHRR PGTFFIDGHP
61 VTDEAVLGEG RLIRGALLRA DDEARDAAPG EVLPPGLVQV HVVGGPGAGR VIHLARGEHV
121 VGRATSSGVR LDDHGVSRAH ASITIDDAGI RLRELEATNP TYVDEARVPP DGAALSVGDR
181 IRVASTTLVL RRPDTTPAAS ECSRGSVRVN RRPRFTPHTE PVTIRFPERP TRPPATRAPV
241 LAALAPLAIS VALAAALRSP VMLLFALMSP VMLLTQWWGD RRHGRVSHRS QLADHARLTA
301 EAESLLDDAL AAEREARHDE QPDLALVASV ATHRDARLWE RRTGDTDHLV LRVGTARQAA
361 RTRVEAPDES RADPTVPDVP VVLDLGVGVI GVAGPRARTR AAVSSLVAQA SVWHSPRSTR
421 VVIISAAPDA ERDWAWATWL PHAAGPPSGP VALVASVDDE AAVVARVAEL LTVIDSRTRP
481 ANGVGVQARA VPRFLVVLDG AAELRGRAGI AAILEAAPSA GVHVVALDET AERLPAECRA
541 QLVLDEGPAP RAELHLDDAT IRDIVPDLPH PAWVGSLARS LAPLEDVTPE TGSSALPDAI
601 TLAAAHALTG HEPTQAPVLV QLWSTSDGRP RAVLGVAQDG PFVVDLAQDG PHCLVGGTTG
661 SGKSELLQTL VVGLAVSTPP DELAFVLVDY KGGSAFKECA QLPHCLGVVT DLDEHLTRRA
721 LESLGAEVKR REALLAEAGA KDLDDYRRVR SQRGELEPLA RLVIVVDEFK MLADELPDFV
781 DGLVRIAAVG RSLGVHLVLA TQRPAGIITG DMRANVSLRI ALRVRDRSDS DDVIESPVAA
841 AVSDQTPGRA WVRTGGGRLS EVQTAFAGAS TSPCRPTQPH LVSVRELTWA DLARPLTVDR
901 PAGADTGSSE LQAVVAAAKQ AAAALGVVGP PSPWLPPLPA SLSRSTLTGD RPAGAVALGL
961 EDAPALQAQM PYTWHPVSDG NLAIAGGART GRTTTARALA VGLAEHWPPT QLHLHVIEGT
1021 PGSLRDLASL PHVGSVTSTA DPALAARVIA RLTDATTRGH QLPDDPAGTG SPTTSDDRRC
1081 HTVLLVDGWE SVEDAFEAVD HGAPAEALLR LARDGMAAGL RLVVTGGRGL ISGRVSSLVQ
1141 HRLVLPMTDP IDLTLAGLSP ELAQGHHGVG RAIDVATGHQ VQLAHVGADP ESGAQVRTTV
1201 AVAERLRAGL WRDSAVGAAG AAGGLPWRVA PLPHAVAWND LPPAGPDWLV LGLGGDDARP
1261 LGFEAGWVGR RALVVGGPRS GRSTVLATMA RQLADAGRPT VVVATRRTPL SWLAGTPQFH
1321 LVSAQDGGRL RQLREAHPDL SVLVDDAEGL DGSPAEPVVL EVAHDLGHPS SWCVAAVDAR
1381 RAASLYRGVV PELARHATGV VLSPVSPNDG DVLGIRVEIA RHRLPGRGVI VLDGATLPIQ
1441 VADPRLPPDP RSDLGRSTKD RADTGCSPPG DSVPPGPVPR DR
//