LOCUS ADU47504.1 3498 aa PRT BCT 08-JAN-2015
DEFINITION Intrasporangium calvum DSM 43043 RTX toxins and related
Ca2+-binding protein-like protein protein.
ACCESSION CP002343-942
PROTEIN_ID ADU47504.1
SOURCE Intrasporangium calvum DSM 43043
ORGANISM Intrasporangium calvum DSM 43043
Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae;
Intrasporangium.
REFERENCE 1 (bases 1 to 4024382)
AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S.,
Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S.,
Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A.,
Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P.
and Lapidus,A.
TITLE Complete genome sequence of Intrasporangium calvum type strain (7
KIP)
JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010)
PUBMED 21304734
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Intrasporangium calvum DSM 43043
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 4024382)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D.,
Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N.,
Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M.,
Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T.,
Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P.
and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083316
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Intrasporangium calvum 7KIP, DSM 43043
collection_date :: 1967
lat_lon :: 55.753 37.604
depth :: Missing
alt_elev :: Missing
country :: Russia
environment :: Air
num_replicons :: Missing
ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989,
IMET 7816, JCM 3097, KCC A-0097, NBRC 12989,
NCIB 10167
biotic_relationship :: Free living
trophic_level :: Chemoorganotroph
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi02320
Type Strain :: Yes
Greengenes ID :: 90541
Funding Program :: DOE-GEBA 2007
Number of Reads :: 847906 pyrosequencing, 11758818 Illumina
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Air in a school dining room
Isolation Comments :: isolated by L.V. Kalakoutskii
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: Gram+
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Intrasporangium calvum DSM 43043"
/mol_type="genomic DNA"
/strain="DSM 43043"
/isolation_source="air in a school dining room"
/culture_collection="DSM:43043"
/type_material="type strain of Intrasporangium calvum"
/db_xref="taxon:710696"
/country="Russia"
/lat_lon="55.753 N 37.604 E"
/collection_date="1967"
/collected_by="L.V. Kalakoutskii"
protein /locus_tag="Intca_0980"
/note="InterPro IPR001343: IPR018511: IPR003995; KEGG:
kfl:Kfla_0735 RTX toxins and related Ca2+-binding
protein-like protein; SPTR: RTX toxins and related
Ca2+-binding protein-like protein"
/transl_table=11
BEGIN
1 MSRRSVNRLV GSIASAVLIT GWGLGPQLPA HAADPDPGVD RVVAILGGGS ATEDLASWTS
61 GLAALGAFGK PIPFVSASPG GLAGLDDLVK EGIADEVAGA TTWGALDALD KAVSLPGGRN
121 GTLDVAVEDL ADGKRVHVDL TITRTAAKQS LTISSADPKV ELASPEGVTV SVEAALSLWI
181 VWTGPTTNRV YLASDAGHAP RVDVDATAHL SASAKAALGI LDVSLSSTDF TVKAHAFAKL
241 NDPNNDGVLA FTESAPGDGE LAADGSLQGL VSAGLDPTGS PSDPATAGSV AGTLAVQADP
301 SGLGSAFPTF SADVTVTWPN ITSGAPVISA PDLAAVVGRF QNMSLRDLAD GLAQVATALT
361 GIQKAKFDAD GSGPGTAIAG DLDLPFLRGT VSDAVKANEV LVAFLKANVV QAPDPGQPAP
421 PGFDASTVGN PKFTSLQDLI TRLKAAGIPV DGLDWKPTID KLALHLTMTK AAPSSPVPMD
481 AGAAKVSKPG ASYTSDGLSI SDGTAWEPGQ WVGMRVVAGT SAGEITANTA SSLTLSGDWI
541 GGKPADTTPF VILGPEAQLG AVTFGDGLTK LPVGSPPDGP RQGILKANSA QTFATVTPSF
601 TADLTLVLDL QEPRTGSACV GFEGNTKPCP FTLETGTFKT EVQSLPLGAD RVMIRTGVPL
661 LKADFPIDTK VDLTANAGFF QVRLEGNLKV CNSSAPANCS TPGTGNMLTI GLKQAGDAQH
721 DLRLRDLFNG LVTATPTGPS QAGDLLDVAL DVRAFGDLTV SVPDAASFFP GGAKLSAKAT
781 WNDLTKTSGA DGPQFDLSDL DKVFALDFKP GSQAELFAIV LKTLQTLSAQ LAEAQPGGTT
841 GIFSTQIPGT GTSLRDLLRR DLSGVGAGVT YGADTLTDTN RTFPTALAGR AVVVGTQVAV
901 VKQTDGVNTV TLTKPWETKP ATGAAYTFRS PLDDALDAMS AHPPQNIQDL VEVLTNRLGS
961 DALKFRFLDD GGTPSIVLDF DWTRTYTAST PLRLQLDGVP ALVSASTSGA GKVAVTGGVD
1021 VAVVVPLAVG TGATDATTLK VLDSSKITVN AAAEFTGTAA GTLGPLTVSA GIPSDQAEAR
1081 ANLSLELGKT TPTNAPVSFG TFLTSLTPTF NASNDPTKAT CGETLATELM VCGRIPLYAT
1141 VAGGTPTSLG TAHLRVANST DPADLTDLND TLPAPDSKPE LEAPAGLATA LANAIADFTQ
1201 IKPGLDGYLE KLEQALRLAT FDGKLPFVGK DLQQGADKVA KLRAELKAEL GAIPATPAEA
1261 RTYLNTQIAK AIADAGLTNT TVKVGYECSA KLEPAAAPTV TPTPADGGTD HTWTYKIVAS
1321 QGDGTGTDGD TILSGEGSSQ TTWAALDNDH FNTLTWPSVT GATKYKILRK DGSTFGLVKV
1381 LDASAGATQT YVDKDPTTPA SYEPVTTKPD LDACAAEAIE GVNITIDLNV GEVDTTLGCK
1441 PGTGCLGDGQ TLPLDIGIPG LALRAGDADA ITYGLGLQLH LKAGIDTDRG FFVHTHDAAA
1501 PEFRVGARFD MPASMKAELA FLDIDVTKNN GTVPLFAGAF MIDVRSGDAS ETASSVLTIS
1561 DFGTLDPSKL FDIKLTAAIN ADWIVKASAS SVLPGVQANF VLEWGFTNKD LKNLGLPKID
1621 FKAVKLDAGG FFSELLGPVL NKIKSVTGPI QPVIDTLYAP IPVLSDLSKL AGGGDVSLIT
1681 LAKAFNTLAG GPDLEFVERI TALVTLVNNM PQCGGGASCL IDVGAFTVPG DKALATSVSP
1741 TSADTLVVKD PATKTGDALK TELNTNGGKG TVFGTGAAGA GSANKSGFTF PILDNPASIF
1801 NVLMGSDVAL VEFDSGPLTL GFTWRQSFGP VYAPPPVMVT LSGSASVSLR FMAGLDTAGI
1861 RYAVEAARTG EQVKALKILD GLYFKTTDSS GKPVPVVRLD GEIAAGASVT ALIIEVGIEG
1921 GLHLTIGFHW NDPNNDGKFR VSEFLQAAIN NPLCLFTTTG RLSLFLRVYI TIGFSPFSTT
1981 FSFTLADITL LDFTAQPDCE PPPPRLGGTV GTTLVVFAGM FATDEERGTP WGNTADTEAD
2041 VVKVTELHFA QRPGDDAGTN PDFDGFAVQM LGERRDYLDT SLERVVVDGR GSTAPLIVSL
2101 VGDGKKETNP STPTTQADLT VFSKDAVVIG SDHADQIQTG TGSSWVDGGK GDDRIVTADG
2161 VGKVAHVAGG DGADAITTGE GDDFVSGDGT LGTPELTRTV QLNAVDKKNH GEAEEQLDGL
2221 IDWTQLTTDP TTGSQTGTGI DIISVGLGVN RVNGGAGDDK IGVAADRPDG LGGTVTSKGN
2281 VLIGGLGSDS IAGGTATDTI YASTETTFGV DSPGPADTLT VKDGKDIPNI IETGTGNDVV
2341 YGSNAEDIVT SHSEKAQKAR ILGGGGPDAL VGGYGSDEIF GGPGDDYVIA EPSEVGALGS
2401 TQHQIEGVSF GLKRTVTHLP LPPNTSPSAK TLVGGLGNDH ILGGDGPASI FGDTLRDTAT
2461 VGAAANETCR DGSPVTSDPV PEGTTSGTGD GNDLIEGGAG VDTVSAGGAR DRVLAHGSAD
2521 LVCGQQGDDV LLGGDGPDRI WGGSGNDRAY GEADADLVFG NDDEDQLYGQ GSTDVIEGND
2581 GSDRASGGDG DDLVYGGTRH AGRADTGPAS DPDAGDILAG DTGVDILIGD NGTVDDPLNT
2641 GDARAIPLDL DGATPTAGRG DLIYGGDGTD TAYGGLGPDK VNGGNDADHL EGNNDSDVVH
2701 GDAGEDEIVG GSFQQAASGI GRPDAGDVLH GDAGPDLMAG DNAILASAAT EADATAVTRM
2761 RGFAANHGVQ LLDLDPTDTA GNWGADEIYG GDGEDVIFGQ RGDDRIKGNA EDDYAEGGPG
2821 IDWVEGNAGD DDLVGGSSDP SGGADETTAG QGDVADALFG GPGDDVALGD NGQVLRPGAG
2881 QTPSSVTVRL GSTSGAAMTP RVIQVWDRST GTGYLAAPPA SRYGADRISG GDGVDVLLGQ
2941 DGDDVITGDA HGDYVEGNGG ADSIFGDLAF GTASAHGTPA TPLAATWPGT PSAAALRVGT
3001 STTPGQDDLI GGTPTPAYRD GGDTIEGNGA DDVILGDDGS LLRTLQGTPG SLTEQVYTDR
3061 YPDGDVPADA TRSRTHDPAL PGPSTRFCLS APTATTCDQT GASGNDRIWG DGGNDGIWGQ
3121 DGNDQISGGD GDDDLYGELG DDRINGDAGE DAILGDRGGV VNQRLSAGDE PMQFTETLQN
3181 PPMETFTGFR RGDYDRRADL LHDVDGDQWI GTSTGTPMPH AGLTEGGRDL IRGGPDADTI
3241 HAGFGDDVAN GDSGGDDVLG GDGEDVLWGG RGCDPTLDAT SPDCLTGGVF DGTSRGADDR
3301 FIDHVFGGRG EPDPAKQQVL GSDIIDLRPR GDYASCVPGD WPVTDGTKKD PVTNDPCLWF
3361 EMTDTHDVDL ANNNHHQGTD WLYGGWDRDV MQGDVAANGP NPGDRLIDWS GVYNLYTHCN
3421 ASYGGFNDIR QMSPDLLAFL QHLAWASGAG REAADVTTPG TSAFVELALV YTADINDHAS
3481 GPAYPTTPGH FEEAACEP
//