LOCUS ADU47504.1 3498 aa PRT BCT 08-JAN-2015 DEFINITION Intrasporangium calvum DSM 43043 RTX toxins and related Ca2+-binding protein-like protein protein. ACCESSION CP002343-942 PROTEIN_ID ADU47504.1 SOURCE Intrasporangium calvum DSM 43043 ORGANISM Intrasporangium calvum DSM 43043 Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium. REFERENCE 1 (bases 1 to 4024382) AUTHORS Del Rio,T.G., Chertkov,O., Yasawong,M., Lucas,S., Deshpande,S., Cheng,J.F., Detter,C., Tapia,R., Han,C., Goodwin,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Rohde,M., Pukall,R., Sikorski,J., Goker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Lapidus,A. TITLE Complete genome sequence of Intrasporangium calvum type strain (7 KIP) JOURNAL Stand Genomic Sci 3 (3), 294-303 (2010) PUBMED 21304734 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Tapia,R., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Intrasporangium calvum DSM 43043 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4024382) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Chertkov,O., Brettin,T., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Gehrich-Schroeter,G., Schneider,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (17-NOV-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083316 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Intrasporangium calvum 7KIP, DSM 43043 collection_date :: 1967 lat_lon :: 55.753 37.604 depth :: Missing alt_elev :: Missing country :: Russia environment :: Air num_replicons :: Missing ref_biomaterial :: DSM 43043, ATCC 23552, CUB 430, IFO 12989, IMET 7816, JCM 3097, KCC A-0097, NBRC 12989, NCIB 10167 biotic_relationship :: Free living trophic_level :: Chemoorganotroph rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02320 Type Strain :: Yes Greengenes ID :: 90541 Funding Program :: DOE-GEBA 2007 Number of Reads :: 847906 pyrosequencing, 11758818 Illumina Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Air in a school dining room Isolation Comments :: isolated by L.V. Kalakoutskii Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454-FLX, 454-Titanium, Illumina GAii ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Intrasporangium calvum DSM 43043" /mol_type="genomic DNA" /strain="DSM 43043" /isolation_source="air in a school dining room" /culture_collection="DSM:43043" /type_material="type strain of Intrasporangium calvum" /db_xref="taxon:710696" /country="Russia" /lat_lon="55.753 N 37.604 E" /collection_date="1967" /collected_by="L.V. Kalakoutskii" protein /locus_tag="Intca_0980" /note="InterPro IPR001343: IPR018511: IPR003995; KEGG: kfl:Kfla_0735 RTX toxins and related Ca2+-binding protein-like protein; SPTR: RTX toxins and related Ca2+-binding protein-like protein" /transl_table=11 BEGIN 1 MSRRSVNRLV GSIASAVLIT GWGLGPQLPA HAADPDPGVD RVVAILGGGS ATEDLASWTS 61 GLAALGAFGK PIPFVSASPG GLAGLDDLVK EGIADEVAGA TTWGALDALD KAVSLPGGRN 121 GTLDVAVEDL ADGKRVHVDL TITRTAAKQS LTISSADPKV ELASPEGVTV SVEAALSLWI 181 VWTGPTTNRV YLASDAGHAP RVDVDATAHL SASAKAALGI LDVSLSSTDF TVKAHAFAKL 241 NDPNNDGVLA FTESAPGDGE LAADGSLQGL VSAGLDPTGS PSDPATAGSV AGTLAVQADP 301 SGLGSAFPTF SADVTVTWPN ITSGAPVISA PDLAAVVGRF QNMSLRDLAD GLAQVATALT 361 GIQKAKFDAD GSGPGTAIAG DLDLPFLRGT VSDAVKANEV LVAFLKANVV QAPDPGQPAP 421 PGFDASTVGN PKFTSLQDLI TRLKAAGIPV DGLDWKPTID KLALHLTMTK AAPSSPVPMD 481 AGAAKVSKPG ASYTSDGLSI SDGTAWEPGQ WVGMRVVAGT SAGEITANTA SSLTLSGDWI 541 GGKPADTTPF VILGPEAQLG AVTFGDGLTK LPVGSPPDGP RQGILKANSA QTFATVTPSF 601 TADLTLVLDL QEPRTGSACV GFEGNTKPCP FTLETGTFKT EVQSLPLGAD RVMIRTGVPL 661 LKADFPIDTK VDLTANAGFF QVRLEGNLKV CNSSAPANCS TPGTGNMLTI GLKQAGDAQH 721 DLRLRDLFNG LVTATPTGPS QAGDLLDVAL DVRAFGDLTV SVPDAASFFP GGAKLSAKAT 781 WNDLTKTSGA DGPQFDLSDL DKVFALDFKP GSQAELFAIV LKTLQTLSAQ LAEAQPGGTT 841 GIFSTQIPGT GTSLRDLLRR DLSGVGAGVT YGADTLTDTN RTFPTALAGR AVVVGTQVAV 901 VKQTDGVNTV TLTKPWETKP ATGAAYTFRS PLDDALDAMS AHPPQNIQDL VEVLTNRLGS 961 DALKFRFLDD GGTPSIVLDF DWTRTYTAST PLRLQLDGVP ALVSASTSGA GKVAVTGGVD 1021 VAVVVPLAVG TGATDATTLK VLDSSKITVN AAAEFTGTAA GTLGPLTVSA GIPSDQAEAR 1081 ANLSLELGKT TPTNAPVSFG TFLTSLTPTF NASNDPTKAT CGETLATELM VCGRIPLYAT 1141 VAGGTPTSLG TAHLRVANST DPADLTDLND TLPAPDSKPE LEAPAGLATA LANAIADFTQ 1201 IKPGLDGYLE KLEQALRLAT FDGKLPFVGK DLQQGADKVA KLRAELKAEL GAIPATPAEA 1261 RTYLNTQIAK AIADAGLTNT TVKVGYECSA KLEPAAAPTV TPTPADGGTD HTWTYKIVAS 1321 QGDGTGTDGD TILSGEGSSQ TTWAALDNDH FNTLTWPSVT GATKYKILRK DGSTFGLVKV 1381 LDASAGATQT YVDKDPTTPA SYEPVTTKPD LDACAAEAIE GVNITIDLNV GEVDTTLGCK 1441 PGTGCLGDGQ TLPLDIGIPG LALRAGDADA ITYGLGLQLH LKAGIDTDRG FFVHTHDAAA 1501 PEFRVGARFD MPASMKAELA FLDIDVTKNN GTVPLFAGAF MIDVRSGDAS ETASSVLTIS 1561 DFGTLDPSKL FDIKLTAAIN ADWIVKASAS SVLPGVQANF VLEWGFTNKD LKNLGLPKID 1621 FKAVKLDAGG FFSELLGPVL NKIKSVTGPI QPVIDTLYAP IPVLSDLSKL AGGGDVSLIT 1681 LAKAFNTLAG GPDLEFVERI TALVTLVNNM PQCGGGASCL IDVGAFTVPG DKALATSVSP 1741 TSADTLVVKD PATKTGDALK TELNTNGGKG TVFGTGAAGA GSANKSGFTF PILDNPASIF 1801 NVLMGSDVAL VEFDSGPLTL GFTWRQSFGP VYAPPPVMVT LSGSASVSLR FMAGLDTAGI 1861 RYAVEAARTG EQVKALKILD GLYFKTTDSS GKPVPVVRLD GEIAAGASVT ALIIEVGIEG 1921 GLHLTIGFHW NDPNNDGKFR VSEFLQAAIN NPLCLFTTTG RLSLFLRVYI TIGFSPFSTT 1981 FSFTLADITL LDFTAQPDCE PPPPRLGGTV GTTLVVFAGM FATDEERGTP WGNTADTEAD 2041 VVKVTELHFA QRPGDDAGTN PDFDGFAVQM LGERRDYLDT SLERVVVDGR GSTAPLIVSL 2101 VGDGKKETNP STPTTQADLT VFSKDAVVIG SDHADQIQTG TGSSWVDGGK GDDRIVTADG 2161 VGKVAHVAGG DGADAITTGE GDDFVSGDGT LGTPELTRTV QLNAVDKKNH GEAEEQLDGL 2221 IDWTQLTTDP TTGSQTGTGI DIISVGLGVN RVNGGAGDDK IGVAADRPDG LGGTVTSKGN 2281 VLIGGLGSDS IAGGTATDTI YASTETTFGV DSPGPADTLT VKDGKDIPNI IETGTGNDVV 2341 YGSNAEDIVT SHSEKAQKAR ILGGGGPDAL VGGYGSDEIF GGPGDDYVIA EPSEVGALGS 2401 TQHQIEGVSF GLKRTVTHLP LPPNTSPSAK TLVGGLGNDH ILGGDGPASI FGDTLRDTAT 2461 VGAAANETCR DGSPVTSDPV PEGTTSGTGD GNDLIEGGAG VDTVSAGGAR DRVLAHGSAD 2521 LVCGQQGDDV LLGGDGPDRI WGGSGNDRAY GEADADLVFG NDDEDQLYGQ GSTDVIEGND 2581 GSDRASGGDG DDLVYGGTRH AGRADTGPAS DPDAGDILAG DTGVDILIGD NGTVDDPLNT 2641 GDARAIPLDL DGATPTAGRG DLIYGGDGTD TAYGGLGPDK VNGGNDADHL EGNNDSDVVH 2701 GDAGEDEIVG GSFQQAASGI GRPDAGDVLH GDAGPDLMAG DNAILASAAT EADATAVTRM 2761 RGFAANHGVQ LLDLDPTDTA GNWGADEIYG GDGEDVIFGQ RGDDRIKGNA EDDYAEGGPG 2821 IDWVEGNAGD DDLVGGSSDP SGGADETTAG QGDVADALFG GPGDDVALGD NGQVLRPGAG 2881 QTPSSVTVRL GSTSGAAMTP RVIQVWDRST GTGYLAAPPA SRYGADRISG GDGVDVLLGQ 2941 DGDDVITGDA HGDYVEGNGG ADSIFGDLAF GTASAHGTPA TPLAATWPGT PSAAALRVGT 3001 STTPGQDDLI GGTPTPAYRD GGDTIEGNGA DDVILGDDGS LLRTLQGTPG SLTEQVYTDR 3061 YPDGDVPADA TRSRTHDPAL PGPSTRFCLS APTATTCDQT GASGNDRIWG DGGNDGIWGQ 3121 DGNDQISGGD GDDDLYGELG DDRINGDAGE DAILGDRGGV VNQRLSAGDE PMQFTETLQN 3181 PPMETFTGFR RGDYDRRADL LHDVDGDQWI GTSTGTPMPH AGLTEGGRDL IRGGPDADTI 3241 HAGFGDDVAN GDSGGDDVLG GDGEDVLWGG RGCDPTLDAT SPDCLTGGVF DGTSRGADDR 3301 FIDHVFGGRG EPDPAKQQVL GSDIIDLRPR GDYASCVPGD WPVTDGTKKD PVTNDPCLWF 3361 EMTDTHDVDL ANNNHHQGTD WLYGGWDRDV MQGDVAANGP NPGDRLIDWS GVYNLYTHCN 3421 ASYGGFNDIR QMSPDLLAFL QHLAWASGAG REAADVTTPG TSAFVELALV YTADINDHAS 3481 GPAYPTTPGH FEEAACEP //