LOCUS ADD41818.1 1191 aa PRT BCT 08-JAN-2015
DEFINITION Stackebrandtia nassauensis DSM 44728 chromosome segregation
protein SMC protein.
ACCESSION CP001778-2095
PROTEIN_ID ADD41818.1
SOURCE Stackebrandtia nassauensis DSM 44728
ORGANISM Stackebrandtia nassauensis DSM 44728
Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae;
Stackebrandtia.
REFERENCE 1 (bases 1 to 6841557)
AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina
Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F.,
Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S.,
Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C. and Klenk,H.P.
TITLE Complete genome sequence of Stackebrandtia nassauensis type strain
(LLR-40K-21T)
JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009)
PUBMED 21304662
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Stackebrandtia nassauensis DSM 44728
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 6841557)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T.,
Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082381
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM
44728
Culture Collection ID :: DSM 44728
GOLD Stamp ID :: Gc01107
Funding Program :: DOE-GEBA 2007
Number of Reads :: 81931 Sanger, 851638 pyrosequence
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 11x Sanger; 29x 454
Gene Calling Method :: Prodigal 1.4, GenePRIMP
Isolation Site :: Soil sample from Nassau Bahamas
Isolation Country :: Bahamas
Latitude :: 25.066127
Longitude :: -77.339025
Oxygen Requirement :: Aerobe
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 28C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
##Metadata-END##
FEATURES Qualifiers
source /organism="Stackebrandtia nassauensis DSM 44728"
/mol_type="genomic DNA"
/strain="DSM 44728"
/isolation_source="soil"
/culture_collection="DSM:44728"
/type_material="type strain of Stackebrandtia nassauensis"
/db_xref="taxon:446470"
/country="Bahamas: Nassau"
protein /locus_tag="Snas_2124"
/inference="protein motif:TFAM:TIGR02168"
/note="TIGRFAM: chromosome segregation protein SMC; PFAM:
SMC domain protein; SMCs flexible hinge domain protein;
KEGG: ppd:Ppro_3319 chromosome segregation protein SMC"
/transl_table=11
/db_xref="InterPro:IPR003395"
/db_xref="InterPro:IPR010935"
/db_xref="InterPro:IPR011890"
BEGIN
1 MHLKSLTLKG FKSFASATTL RFEPGITCVV GPNGSGKSNV VDAIAWVLGE QGAKALRGGK
61 MEDVIFAGTS GRAPLGRAEV TLTIDNSDGA IPIDYTEVSI TRRMFRSGEG EYEINGDRCR
121 LLDIQDLLSD SGIGREMHVL VGQGKLDSYL HARPEDRRAF IEEAAGVLKH RKRKEKALRK
181 LEAMEANLNR LNDLTSELRR QLKPLGRQAE LARRAAGIQA DLRDARQRLL ADDLAQLRTG
241 LARDLADENS VRAKRERVEA AYNEVAEQLT TLESELAADA PALTRAQETW YRLSALQERL
301 RSTGQLAAER VRYLSEEAQE ERPGRDPEQL EAEAVRVREQ ETELRDALVA DQERLTEAVD
361 ARQETEQALS EAEKNLVEAV KAVAARREGL AKLTGQVGAL RSRSQAAADE IARIASSLAQ
421 ARDRAEACKD ALSEAQSQSD FVDAGDVDLE ERLTAAQREV EQAKARVKEL ATAERAAHTD
481 ATQWKAREEA LAMGLRRKDG AGALLGKAEQ VPGFLGSISA LLTVEPGYEA ALAASLGRLA
541 DAVAVSGGEG AVSALQLLKA DDAGQASLLL ASGAPGAAET TPADITGLPE GVVPAANLVK
601 VPAELSAAVA RTLAGMVIVD TLDLARDLVA SRPELTAVTR DGDVLGRDWA VGGSASGQSF
661 IEVQAAVDEA RDKRAESEAR AESLAAQLEG AREDETSRQT ALEAMKAKRA EADKERNAVA
721 RKLAELGAAA NSAEGEVRRL SEAKEEAETA RDTDLAGLAE LEEQLRIAES APDEEDPSTA
781 ERDRLAVTLQ QSRQNEMETR LAVRTAEERV AALAGRADGL ARQAAAERQA RERAAVRKAA
841 RQRGAAIAGA VAQGVEAALA RIAESLDRAA AERDAAQQAK TAREAAVTEA RKRVREHGAE
901 LERLTDAVHR DEVARTEQRL RIEQLEARAG EEFGIDVDTL IAEYGPEQPV PPSAAELAKA
961 EADGKPEPMA VPFERAVQEK RAARGERELK LLGKVNPLAL EEFAALEERY KFLSEQLDDL
1021 TKTRKDLLSV VKEVDDRILD VFTEAYHDVA REFEHVFATV FPGGDGRLLL TDPDNMLTTG
1081 IEVEARPPGK KVKRLSLLSG GERSLTAIAL LCAIFKARPS PFYLMDEVEA ALDDVNLGRL
1141 LTLLTQLRES SQLLVITHQK RTMEVADALY GVTMRSGVTQ VISQRLSQSE D
//