LOCUS ADD41818.1 1191 aa PRT BCT 08-JAN-2015 DEFINITION Stackebrandtia nassauensis DSM 44728 chromosome segregation protein SMC protein. ACCESSION CP001778-2095 PROTEIN_ID ADD41818.1 SOURCE Stackebrandtia nassauensis DSM 44728 ORGANISM Stackebrandtia nassauensis DSM 44728 Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia. REFERENCE 1 (bases 1 to 6841557) AUTHORS Munk,C., Lapidus,A., Copeland,A., Jando,M., Mayilraj,S., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Han,C., Detter,J.C., Bruce,D., Goodwin,L., Chain,P., Pitluck,S., Goker,M., Ovchinikova,G., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C. and Klenk,H.P. TITLE Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21T) JOURNAL Stand Genomic Sci 1 (3), 234-241 (2009) PUBMED 21304662 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6841557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Stackebrandtia nassauensis DSM 44728 JOURNAL Unpublished REFERENCE 3 (bases 1 to 6841557) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Tapia,R., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Mayilraj,S., Goker,M., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (01-OCT-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082381 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Stackebrandtia nassauensis LLR-40K-21, DSM 44728 Culture Collection ID :: DSM 44728 GOLD Stamp ID :: Gc01107 Funding Program :: DOE-GEBA 2007 Number of Reads :: 81931 Sanger, 851638 pyrosequence Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 11x Sanger; 29x 454 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Soil sample from Nassau Bahamas Isolation Country :: Bahamas Latitude :: 25.066127 Longitude :: -77.339025 Oxygen Requirement :: Aerobe Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 28C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil ##Metadata-END## FEATURES Qualifiers source /organism="Stackebrandtia nassauensis DSM 44728" /mol_type="genomic DNA" /strain="DSM 44728" /isolation_source="soil" /culture_collection="DSM:44728" /type_material="type strain of Stackebrandtia nassauensis" /db_xref="taxon:446470" /country="Bahamas: Nassau" protein /locus_tag="Snas_2124" /inference="protein motif:TFAM:TIGR02168" /note="TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: ppd:Ppro_3319 chromosome segregation protein SMC" /transl_table=11 /db_xref="InterPro:IPR003395" /db_xref="InterPro:IPR010935" /db_xref="InterPro:IPR011890" BEGIN 1 MHLKSLTLKG FKSFASATTL RFEPGITCVV GPNGSGKSNV VDAIAWVLGE QGAKALRGGK 61 MEDVIFAGTS GRAPLGRAEV TLTIDNSDGA IPIDYTEVSI TRRMFRSGEG EYEINGDRCR 121 LLDIQDLLSD SGIGREMHVL VGQGKLDSYL HARPEDRRAF IEEAAGVLKH RKRKEKALRK 181 LEAMEANLNR LNDLTSELRR QLKPLGRQAE LARRAAGIQA DLRDARQRLL ADDLAQLRTG 241 LARDLADENS VRAKRERVEA AYNEVAEQLT TLESELAADA PALTRAQETW YRLSALQERL 301 RSTGQLAAER VRYLSEEAQE ERPGRDPEQL EAEAVRVREQ ETELRDALVA DQERLTEAVD 361 ARQETEQALS EAEKNLVEAV KAVAARREGL AKLTGQVGAL RSRSQAAADE IARIASSLAQ 421 ARDRAEACKD ALSEAQSQSD FVDAGDVDLE ERLTAAQREV EQAKARVKEL ATAERAAHTD 481 ATQWKAREEA LAMGLRRKDG AGALLGKAEQ VPGFLGSISA LLTVEPGYEA ALAASLGRLA 541 DAVAVSGGEG AVSALQLLKA DDAGQASLLL ASGAPGAAET TPADITGLPE GVVPAANLVK 601 VPAELSAAVA RTLAGMVIVD TLDLARDLVA SRPELTAVTR DGDVLGRDWA VGGSASGQSF 661 IEVQAAVDEA RDKRAESEAR AESLAAQLEG AREDETSRQT ALEAMKAKRA EADKERNAVA 721 RKLAELGAAA NSAEGEVRRL SEAKEEAETA RDTDLAGLAE LEEQLRIAES APDEEDPSTA 781 ERDRLAVTLQ QSRQNEMETR LAVRTAEERV AALAGRADGL ARQAAAERQA RERAAVRKAA 841 RQRGAAIAGA VAQGVEAALA RIAESLDRAA AERDAAQQAK TAREAAVTEA RKRVREHGAE 901 LERLTDAVHR DEVARTEQRL RIEQLEARAG EEFGIDVDTL IAEYGPEQPV PPSAAELAKA 961 EADGKPEPMA VPFERAVQEK RAARGERELK LLGKVNPLAL EEFAALEERY KFLSEQLDDL 1021 TKTRKDLLSV VKEVDDRILD VFTEAYHDVA REFEHVFATV FPGGDGRLLL TDPDNMLTTG 1081 IEVEARPPGK KVKRLSLLSG GERSLTAIAL LCAIFKARPS PFYLMDEVEA ALDDVNLGRL 1141 LTLLTQLRES SQLLVITHQK RTMEVADALY GVTMRSGVTQ VISQRLSQSE D //