LOCUS ACV55021.1 1153 aa PRT BCT 11-DEC-2013
DEFINITION Eggerthella lenta DSM 2243 DNA polymerase III, alpha subunit
protein.
ACCESSION CP001726-1026
PROTEIN_ID ACV55021.1
SOURCE Eggerthella lenta DSM 2243
ORGANISM Eggerthella lenta DSM 2243
Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales;
Eggerthellaceae; Eggerthella.
REFERENCE 1 (bases 1 to 3632260)
AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T.,
Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M.,
Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K.,
Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M.,
Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L.,
Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A.,
Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C.
TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI
0255)
JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009)
PUBMED 21304654
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The complete genome of Eggerthella lenta DSM 2243
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 3632260)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E.,
Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L.,
Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D.,
Pukall,R., Klenk,H.-P. and Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4082980
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243
Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979
GOLD Stamp ID :: Gc01054
Funding Program :: DOE-GEBA 2007
Number of Reads :: 39464-Sanger, 471609-454
Assembly Method :: Newbler version 1.1.02.15, Phrap
Sequencing Depth :: 10.2x Sanger; 25.3x 454
Gene Calling Method :: Prodigal
Isolation Site :: Rectal tumor
Collection Date :: 1938
Host Name :: Homo sapiens
Host Health :: Patient with rectal tumor
Body Sample Site :: Blood
Oxygen Requirement :: Anaerobe
Cell Shape :: Rod-shaped
Motility :: Nonmotile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 37C
Gram Staining :: gram+
Biotic Relationship :: Free living
Diseases :: Bacteremia
Habitat :: Blood, Host, Human intestinal microflora
Phenotypes :: Pathogen
##Metadata-END##
FEATURES Qualifiers
source /organism="Eggerthella lenta DSM 2243"
/mol_type="genomic DNA"
/strain="DSM 2243"
/culture_collection="DSM:2243"
/type_material="type strain of Eggerthella lenta"
/db_xref="taxon:479437"
protein /locus_tag="Elen_1050"
/EC_number="2.7.7.7"
/inference="protein motif:TFAM:TIGR00594"
/note="KEGG: sfu:Sfum_1225 DNA polymerase III, alpha
subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM:
DNA polymerase III alpha subunit; PHP domain protein;
nucleic acid binding OB-fold tRNA/helicase-type; SMART:
phosphoesterase PHP domain protein"
/transl_table=11
/db_xref="InterPro:IPR003141"
/db_xref="InterPro:IPR004013"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR004805"
/db_xref="InterPro:IPR011708"
BEGIN
1 MAFVHLHNHT EYSLLDGHTH IYDMVKRAAD LDMPAVAISD HGVMSGVPQL CEMCDKVEAE
61 TGKRVKPIYG CEVYFTTDEE LRKDTKPKLY HLLLLAKTNE GYHNLVKLVS ESHVDNFYYK
121 PRTTFSMLQK YGKGIIGSSA CIAGIIPKLL DNRQVDEAVE WAKKFASCFE PGDFYIELQN
181 QGIRTDAGFT QTELNHMLTD VAKAAGLKTI ATNDFHYLTR EDARAQDYML CIGTGAAFND
241 ANRMRFENDQ FYMKTEEEMR EALKDFPEAC DTTVEVAEKV NVVLERDSIL PRFPLPEGET
301 EESYFRKRVQ EGLVKHYGNP VPQEAQERAD YEMGIIIQQG FPAYFLIVQE YIEWARSQGI
361 GVGPGRGSAA GAIVAYAMDI TALDPLSNGL LFERFLSPER VEMPDIDVDF EQGRREEVIS
421 HIKDVYGEDH VSQVITFGTL QAKNAVRDAA RVLDYPYSTG DKITKMIGDE LGITIDKALA
481 TNPDLKKAYE TEEDVKAVID AALSIEGHVR GEGVHACATI ICRDPMADHV PMKRDTKGGG
541 IITQYDGHYT PELGLLKMDF LGLRTLDVLT IACRNIEQRF GTKVIPEDIP IDDEGAFKLM
601 QSGNMDGLFQ VEGALYVSLF ARLPPTRFSD IVASIALNRP GPLESGMVED YIKVASGKTS
661 IHYYDERLRP ILEETYGTMV YQEQIMQISM AMSGFSAGKA DKLRKAMGKK KLDVMRALQE
721 DWNTGAVENG YPLEIAKQIW EDAEKFAKYA FNKSHSAAYA ILVMRTAYLK AHYPNDFMAA
781 VLSSYMGNTD RLIRYIASCN HSGIPVLPPD INSSNAEFTP TDEGVRFGLV GVRGVGANVA
841 EAIIEEREAN GPFTSLHDFV NRLDAKCYNR KTLEALIKGG AFDSTGYTRK QLMYFVDETP
901 LLESASKRQK DRESGQVSMF DLFGDDPDSG FEEEVPEPDG VEWPKRQLLT FEKEIMKIYV
961 SDHPLRPYEG TIARMTKFSL GDLAERTKEI KSAVFVGMIS NVVTKLTKRG TKMATFTLED
1021 TTGHVECICF KYDDNAEAIQ EDAIVKVKGK FEANDRGNQI MAFEVEVIEL NEADARPSHL
1081 ELKVASSDFD QSKSLRLNRI LKSYPGRDGV VLLVQQSDGR KFRAELPVSV DSRSPVMRSE
1141 IQDLFGSQVW RAS
//